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ymdB

Gene
ymdB
Protein
2',3'-cyclic-nucleotide 2'-phosphodiesterase
Organism
Bacillus subtilis (strain 168)
Length
264 amino acids
Function
Plays a central, regulatory role in the late adaptive responses and affects the levels of many genes (PubMed:24163345). May act via regulation of cAMP levels (PubMed:26904951). Decreases the expression of motility genes and induces genes involved in biofilm formation, by controlling the expression of SlrR (PubMed:21856853). Required for formation of intercellular nanotubes that bridge neighboring cells to allow molecular exchange (PubMed:26906740). Plays a key role in directing the early stages of colony development (PubMed:26904951). In vitro, has a metal-dependent phosphodiesterase activity against 2',3'-cAMP and 2',3'-cGMP. Has also 3',5'-cyclic-nucleotide phosphodiesterase activity, but cannot use cyclic di-AMP or cyclic di-GMP, and does not have phosphatase activity (PubMed:24163345).
Similarity
Belongs to the YmdB-like family.
Mass
29.289 kDa
Sequence
MRILFIGDVVGSPGRDMVKEYVPKLKTKYKPHFTIINGENAAHGKGLTEKIYHSLIQSGADAITMGNHTWDKKEIFDFIDDVPNLVRPANFPEGTPGKGITYVKANGKELAVINLQGRTFLPPLDDPFLKADELIAEAAKRTPYIFIDFHAEATSEKLALGWYTDGRASAVVGTHTHVQTADNRILPKGTAYITDVGMTGPYDGILGMDRETIIKRFKTNLPVRFTVAEGKTTLSGVVIDIDDQTKKAVKIERILINDDHMFFE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Enterobacter sp. (strain 638)
Length
180 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.141 kDa
Sequence
MKPQIEVVVGDITTMEVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECAPGHAVITIAGDLPAKAVIHAVGPVWQGGENHEARTLQDAYLNCLRLAAANGYKTLAFPAISTGVYGYPKAAAAEIAVDTVSEFLTRKPLPERVYFVCYDEENAQLYQRLLIQRGLTPDA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56)
Length
180 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.414 kDa
Sequence
MKPQIDVIHGDITTMHVDVIVNAANPSLMGGGGVDGAIHRAAGPQLLEACKTVRQQQGECPPGHAVITLAGDLPAKAVIHAVGPIWHGGDRHEASILEEAYRNCLRLAADNGYKTMAFPAISTGVYGYPKAAAATIAVDTVYRYLSLKPMPEKVTFVCFDEETLHLYQRLLTQRGQELEI

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Cronobacter sakazakii (strain ATCC BAA-894)
Length
180 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.155 kDa
Sequence
MSGRINVVQGDITLIDVDVIVNAANPSLMGGGGVDGAIHRAAGPALLAACRQVRQQQGECQPGHAVITEAGDLAAKAVVHTVGPVWRGGQDNEPQLLADAYRNSLQLVAANGYNSVAFPAISTGIYGYPKAAAAQIAFETVSDYLTRHPQPKQVYFVCYDEENFLLYQRLLGQYDEQPGA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Salmonella agona (strain SL483)
Length
179 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.164 kDa
Sequence
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEYQEAELLEAAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Salmonella gallinarum (strain 287/91 / NCTC 13346)
Length
179 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.169 kDa
Sequence
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRSCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Salmonella newport (strain SL254)
Length
179 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.21 kDa
Sequence
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEIAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Salmonella typhi
Length
179 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.196 kDa
Sequence
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Length
179 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.196 kDa
Sequence
MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYDEETARLYARLLTQQGDDPA

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Escherichia coli (strain K12)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate (PubMed:21257746, PubMed:26481419). Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation (PubMed:19141481). Overexpression inhibits biofilm formation via an RNase III-independent pathway. This inhibition is RpoS-dependent (PubMed:24267348, PubMed:28582517). Overexpression also results in increased susceptibility to apramycin (PubMed:28034758, PubMed:28582517).
Similarity
Belongs to the YmdB family.
Mass
18.88 kDa
Sequence
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
19.133 kDa
Sequence
MKSRIHVLQGDITQLAVDVIVNAANSSLMGGGGVDGAIHRAAGPELLEACQKVRRQQGECPTGHAVITIAGNLPARAVIHTVGPVWRDGEHNEDQLLHDAYLNSLKLAQANGYKSIAFPAISTGVYGFPRAAAAEIAVKTVSDFITRHALPEQIYFVCYDEENSRLYNRLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Shigella dysenteriae serotype 1 (strain Sd197)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.938 kDa
Sequence
MKTRIHVVQGDITKLAVDVIVNVTNPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Shigella flexneri serotype 5b (strain 8401)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.91 kDa
Sequence
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYSYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.917 kDa
Sequence
MKSRIHVQHGDITQLTVDVIVNAANASLLGGGGVDGAIHRAAGPTLLEACKKVRQQQGECPAGHAVITLAGNLPAKAVIHTVGPVWRGGDHNESQLLEDAYFNSLQLVLANGYRSVAFPAISTGAYGYPRPAAAEIAVNTVADFLARHALPEQVYFVCYDEETARLYERLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Citrobacter rodentium (strain ICC168)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.932 kDa
Sequence
MNSRIHVIHGDITTVAVDAIVNAANPSLMGGGGVDGAIHRAAGPELLEACMTVRRQQGECPPGHAVITAAGRLPAKAVIHTVGPIWRGGEHNEAQLLHDAYLNSLNLALANGYQSIAFPAISTGVYGYPRAAAAEIAVNTISEFITRRASPEQIYFVCYDEETTRLYQRLLTQQGDQ

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Escherichia coli O157:H7
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.88 kDa
Sequence
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Length
177 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.88 kDa
Sequence
MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQQGDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032)
Length
176 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.892 kDa
Sequence
MSGRINVVQGDITRIDTDVIVNAANPSLMGGGGVDGAIHRAAGPSLLAACKVVRQQQGECQPGHAVITEAGDLAAKAVIHTVGPIWRGGHDNEPQLLADAYRNSLELVTANGYNSVAFPAISTGIYGYPKAAAAQIAFETVSDYLTRRPQPKQVYFVCYDEENFLLYQRLLGQYDE

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Klebsiella pneumoniae (strain 342)
Length
175 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.457 kDa
Sequence
MAVQPEVILGDITTLEVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASYP

Gene
ymdB
Protein
O-acetyl-ADP-ribose deacetylase
Organism
Klebsiella variicola (strain At-22)
Length
175 amino acids
Function
Deacetylates O-acetyl-ADP ribose to yield ADP-ribose and free acetate. Down-regulates ribonuclease 3 (RNase III) activity. Acts by interacting directly with the region of the ribonuclease that is required for dimerization/activation.
Similarity
Belongs to the YmdB family.
Mass
18.457 kDa
Sequence
MAVQPEVILGDITTLEVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGDLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLAAANNYRSIAFPAISTGVYGYPKEEAAEIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASYP