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rrp42

Gene
rrp42
Protein
Exosome complex component rrp42
Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Length
299 amino acids
Function
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. ski6 is part of the hexameric ring of RNase PH domain-containing subunits proposed to form a central channel which threads RNA substrates for degradation (By similarity).
Similarity
Belongs to the RNase PH family.
Mass
32.013 kDa
Sequence
MQLSLPELSYTHKSITEFEPAIRNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEVGDATPEGGKYVASVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVVILSSSPYENILSALSLAAYLALQTTRLPKISTPNVTDITIGSTKYEPSEEYDVDSEWENALPLQGLELMSVIILVSSIDQVIIVDPTIEESSVAQVTYAIGVQASGAISYTRVVGTGGGYASTGRAITVERYIELLETASTVGTKLLNASSDILSFKGLGFFDILP

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Length
277 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.497 kDa
Sequence
MSNDEIVAGIMRDYILNLLKEKKRIDDRGFEDYRPIEVEVGVIEKAEGSALVKLGNTQVLVGIKATLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESRALNLEKMVIAPGKIVRVVFIDVHVLDHDGNLMDAIGIGAIAALLNARVPKVLYNEETGEVEILEEKEPLPVEKIPISVTFAKIGNYLVVDPTLEEEQIMDGRLTITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKIILNALEKANNSEE

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Length
276 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.162 kDa
Sequence
MSITPHRLPVAPVIVREAYLSLLRKGWRPGDRDLKTPRNVKIETGIIEKAEGSALVKLGKTQVIAGVKAGVGAPFKDTPNQGVLTVHAEFVPLASPVFEPGPPDENAIELARVVDRSLREVGAVDLESLVIRPGEKVWVLWVDLYIIDHDGNLFDASMLATMAVLLTARLPRYEESETGEIIISKEGEGEELKVKTRVVTVTTAKIDRYIVVDPNIEEEAVSDVRLVTAVDENGRIVGLQKTGMGSLTEADIETMIGYSLEASKVYFKALEEAIKP

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.194 kDa
Sequence
MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfolobus islandicus (strain M.16.27)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.256 kDa
Sequence
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfolobus islandicus (strain M.16.4 / Kamchatka #3)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.282 kDa
Sequence
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfolobus islandicus (strain L.S.2.15 / Lassen #1)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.282 kDa
Sequence
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfolobus islandicus (strain M.14.25 / Kamchatka #1)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.256 kDa
Sequence
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALHNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.281 kDa
Sequence
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLNYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.282 kDa
Sequence
MSSTPSNQNIIPLIKKESIVSLFEKGTRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQDSNGFRVNKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQKSGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Length
275 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
30.139 kDa
Sequence
MSITPSNQNITSLLKKESILNALERGIRLDGRKNSDYRPISVTLNYAKKAEGSALVKLGDTMVLAGVKLEEEEPFPDTPNQGNLVVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSKAVDLSKLVIIPGKKVWTAWVDVYVLDYGGNVLDACTLAAVAALYNTKLPKVEIEGDNVKIIKEEKTDVTPIAYPVVTVTVAKIGKYLVVDPSLDEESIADVKISFSYVQDGRIVGMQKSNFGSLSLQEVDVAESLARSASQKLFEELKKQINM

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Length
274 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.952 kDa
Sequence
MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEVETLDETEPLPVEKIPVPVTFAKIGNILVVDPSLDEELVMDGKITITTDETGHISAVQKSEGGAFKLEEVMYAVETAFKKAEEIRKLILEAVEKAKQ

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
Length
274 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.775 kDa
Sequence
MASISPYGKRFISYLRREQIRRLLATKYRVDGRGPEQTRNVEINVGVVKTADGSAEVKLGKTHVVAGVKVGLGQPFPDAPDEGVLVVNAEVLPHASPYTEVGPPDEFAIELARVVDRGIRHCGYVDFKKLAVEGGKAYVLWIDLYVINDDGNLIDVANLASVAALKNTQLPVVVKDEAGVVKLDRNNKAPLPVDISKAPIAVSVGKIGNVLFLDPTFEEELSLDGRITFTFSEDKIVAAQKTLGYFTQSEIEAALNLALRGRDRLLEALKSALK

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Length
274 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.995 kDa
Sequence
MSDNEIVAGIMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGIIEKAEGSALVKLGSTQVLVGIKTTLGEPFPDTPNMGVMTTNVELVPLASPTFEPGPPDERAIELARVTDRGIRESRALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIASIAALLNAKVPKVEYNEETGEVEILEEKEPLPVERIPIPVTFAKIGNILVVDPSLEEELVMDGRLTVTTDETGHISAVQKGEGGAFKLEEVMYAVETAFKKAEEIRKIVLEAIKKSGE

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
Length
273 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.974 kDa
Sequence
MSDVEIMAGIMRDRILNLLKEGKRIDGRSFEEYRDIEIKTGFIEKAEGSAWVRLGGTRVLVGIKVDVGEPFPDLPDRGVMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESQAVELEKLVIVPGKLVRVVFIDVHVLDHDGNLFDATGLAAMAALMTTKIPKVEYNEETGEIIKLDEYEPLPVKHVPIPVTFAKIGSSIIVDPNLDEETVMDSRLTITTDETGHISAVQKGEGGSFKLEEVMYAIDTALKKADELRKILLEAVGSAS

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Length
272 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.775 kDa
Sequence
MSEMEVMASIMRDHIIELLREGKRIDGRSFEDYRDLEIKVNVIEKAEGSAWVRLGDTQVLVGIKAELGEPFPDLPDRGVITTNVELVPLASPTFEPGPPDENAIELARVVDRGIRESQAVDLEKLVIVPGKLVRVIFIDVHVLDHGGNLLDASGIGAIAALLSTKLPKVNYNEETGEVEILDEYEPLPVNHVPIPVTFAKIGNSIVVDPSLDEERVMDGRLTITTDETGHISAAQKGEAGAFKMEEVMYALEVALKKGNEIREKVLKAVGRA

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Thermococcus onnurineus (strain NA1)
Length
272 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.535 kDa
Sequence
MSEMEVMASIMRDHILALLKEGKRVDGRSLEDYRDLEIKINVIEKAEGSAWVKLGNTQVLVGIKVDMGEPFPDLPEKGVITTNVELVPLASPSFEPGPPDERAIELARVVDRGIRESGAVELEKLVIVPGKLVRVVFIDVHVLDHDGNLLDASGIGAIAALMSAKMPKVVYDEESGEVQILDEYEPLPVSKMPIPVTIAKVGGNLLVDPNLDEELVMDGRITITTDENGMISSVQKSEGGSFKLEEVMYAIDLALTKAAEIREKVLEAVGAE

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Length
271 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.893 kDa
Sequence
MVNKMDIIPEITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPFPDTPEMGVILTNSELLPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGGEGPLTRDDVLKAVSIAVEKVPQLIEYLDKSMTP

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
Length
267 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
29.277 kDa
Sequence
MDLDLLARIKRHEVLAAIRAGERIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVNAELVPLADPSFEPGPPDENAIELSRVVDRGIRESEMIDLEELCIEEGEHCWVTFVDIHVLDHDGNLFDASMIGSVSALSITEVPKAEVVDDEVEVMEEDTEPLAINDFPISVTIAKVGEYLLVDPCLEEEVIMDTRLTVTVTESGEVCAVQKGELGDFPEHLLEDAIDLATKKAEEVRRTVKAQL

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
Length
266 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
28.719 kDa
Sequence
MKKMSEIIATLKKDYIYNLMIKGKRQDGRGFKDFRDLKLETNVIVKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREEAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHVLNDDGNIIDASCLAAIAALMTTMVPNEQQGLGEDVPLAMKEMPVGITIAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGISPLTEAELFEAIDLALEKAAELRGLYLEGLAKSE

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Length
266 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
28.791 kDa
Sequence
MKKMSEIIATLKKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVGVKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDIKKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMKEMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGPVPLTEAELFEAIDMAIEKAAEIRGLYLEGLAKSE

Gene
RRP42
Protein
Exosome complex component RRP42
Organism
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Length
265 amino acids
Function
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. RRP42 is part of the hexameric ring of RNase PH domain-containing subunits proposed to form a central channel which threads RNA substrates for degradation.
Similarity
Belongs to the RNase PH family.
Mass
29.055 kDa
Sequence
MSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIVSIKSKVVDHHVENELLQVDVDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKYSFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPKLISAFDDLEVEELPTFHDYDMVKLDINPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRSVALNDSNVKSFKPHLLKQGLAMVEKYAPDVVRSLENL

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50)
Length
260 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
27.732 kDa
Sequence
MSEDVIAEIKRDYIYSLANQGDRADGRKFDEFRAISVETGVINKAEGSARVKIGDSQVVVGVKIQPGEPFPDTPDSGVIITNLELVPLASPTFESGPPREDAIELARVVDRGVRESGAIDLSKLCIESGQKVWMVFIDVHVLDHDGNLMDAASLGAIAALKATKIPNSKFGLGEDVKLPLNDVPIGVTAVNIGGAIMLDPSLDEESVAPCKLTVITNKEGAISGMQKSGVGTLTPDQINHIIRLAKEKANVLREKLEGIQ

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
Length
260 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
28.362 kDa
Sequence
MVKESAEILSEIRKNYILSTMKGGKRIDGRLPDEFRELTIIENYIPRANGSAYVALGNTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPEKLVIEQGKKVWIVFLDINVLDYDGNLIDASTIAAVAALRNAVVPASKEGGEDFKLPVSSTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKGEIGAFTVEDVKKAVKMSLEVGKKLREKYFR

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
Length
260 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
28.502 kDa
Sequence
MVKESAEILSEIRKNYILTTMKGGKRIDGRLPDEFREITIIENYVPRANGSAYVALGKTRVVAGVKIEAGEPFPDTPDQGVLTTNVELLPIAFPSFEAGPPNDLAIEVSRVVDRGIRESKMISPDKLVIEQGKKVWIVFLDINVLDYDGNLIDACTIAAVSALRNAIVPASREGGEDFKLPVVNTPISVTMVKIGDTLVCDPSLEEDQICGGRITVTTTEDGHIRAMQKGEIGVFTLDDVKKAIKMSLKVGKNIREKYFR

Gene
rrp42
Protein
Exosome complex component Rrp42
Organism
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Length
259 amino acids
Function
Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site.
Similarity
Belongs to the RNase PH family. Rrp42 subfamily.
Mass
28.647 kDa
Sequence
MPEDILVDIKRDYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEPYPDTPDRGVIIVNAELVPLASPTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSGGYLLDEKLFDELLDVSINCARKLREKFKEI