Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Sequence
MTHPQTIALVESLDHEGRGVAHVDGKTLFIDGALPYEKVIYSSYRKKPSYENAQTSAVLKESFMRADPRCPHFGVCGGCSMQHVEFTAQVAIKQRVLEDNLKRIGKVKAERVLTPIAGPAWHYRHRARLSARMVAKKGGVLVGFHEKSSSYIAEMRECHILPKHISDLIMPLREMIATLSISQRMPQVEVAVGDKLDILVFRNMDDITDADFAILKAFSDKHGAAERPLQIWLQPKGPDTCYPIYPLDAPKLTYSMPEFAVEMPYYPTEFTQVNPQINAVMVARALKFLDPQPGERIADMFCGIGNFTLPIARSGAVVHGMEGSQPLVRRAVENATHNGLQDKVSYEMANLFDVTEESFAALGKFDKMLVDPPRDGAVQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKGYTLKAAGIINMFPHTAHVESVAWFEKTGPCKTRKEVEEIEALEAAEREAAKAARLAEENAEKARKAAELAEKAAAKEARRAHYFAEKARRDAEEAASDQ