PdeB

Gene

pdeB

Protein

Cyclic di-GMP phosphodiesterase PdeB

Organism

Shewanella oneidensis (strain MR-1)

Length

856 amino acids

Function

Affects motility and biofilm formation, and is linked to the regulation of sulfate uptake and assimilation.

Mass

95.807 kDa

Sequence

MRIGNKILVFIVGFCLPAVVLVSYCLGVWFDHRVELLRQDNVRHELANIQQQFRIDVDRLGFLTNIYASPLSHLDSEQLKSLESSWLESSMSGNLSWFILRDGNLQNVFQNEQPIAEANRQEIAKAITTQAKPEFASAYLIGDKGYVVTAVASHLGEYVLLVRQLTERDLLEYAQTSLVARVSMSNVVTAHHSSHSSSVALPSLISQQPIYLHVEFSDDPFRDVKLSLDWVSLAVILLGILIVALGYVWLRACLLQPFKSLMQQLALVDPMASVYRPVTSEGNEELSVLANRVNSLLARIYQQKERGKITLESIAEAVILTDIEAKVIYMNPKAETLLEVASSNAVGESLASLLKAGEQLNQAVFHCIRLGETMPQVAKIKLLTTMPRIIERSISNVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGITGLLNRQAFEEQLPEFASQARSLAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGLVICDRTALAVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINAQELLKDADIACIAAKAKGTNQIHIYDDKDKELTYQRNAPKWAVRIAQAIEENELLLYYQPIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEVIRKAFLWLSLNSQLWQDHCISINLSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETTAIQNRHRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAKDYAIVKSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGRPQPLASYCEQFETRLAQRA

Protein

Cyclic di-GMP phosphodiesterase PdeB: pdeB

Gene

pdeB

Protein

Probable cyclic di-GMP phosphodiesterase PdeB

Organism

Escherichia coli (strain K12)

Length

516 amino acids

Function

Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic-di-GMP (c-di-GMP) to 5'-pGpG.

Mass

58.72 kDa

Sequence

MRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNVPQCSSLEHESPPDTFPEPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPLPEMNISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHPQQHISINLESPVLTSEKIPQLLRDMINHYQVNPRQIALELTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL

Protein

Probable cyclic di-GMP phosphodiesterase PdeB: pdeB

Gene

PdeB

Protein

Cyclic di-GMP phosphodiesterase PdeB

Organism

Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)

Length

379 amino acids

Function

Phosphodiesterase (PDE) that catalyzes the hydrolysis of cyclic diguanylate (c-di-GMP) to GMP.

Mass

43.457 kDa

Sequence

MQNSESIIKNIKNSSYLIDKEFLVWPENAFIGDKNIELIEKWNLKSYIKERKNFFSDDSVKKEYEEIHKKFNEEAISSYHVIISNLEEIYENCKRNKKIYYQDIMPTVKKVIEFYKKQKKIFIKYFRIPKLSANYHIIHSVNTAILTVALGNEMGLNNYKTVELCSIALLHKIGFLFIPSKISEKKEALTEEELEIIKKYPIISYKIASTSNLSRSICLTLLTHKENLDGTGYPKGLTSENISIESNIIGAASAYSAIILDKAYKKSFNSGASIIELIKDADKKFDKRVLKLIINAISSCPLDFIVELNDNSIAKIVDIDESNPNLPYINYIIKNGKVIDKNEQSSVQSIPNTNTGIKKILNQNEIELIKNKYSLIDII

Protein

Cyclic di-GMP phosphodiesterase PdeB: PdeB