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rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
Length
514 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
57.025 kDa
Sequence
MTHPQTIALVESLDHEGRGVAHVDGKTLFIDGALPYEKVIYSSYRKKPSYENAQTSAVLKESFMRADPRCPHFGVCGGCSMQHVEFTAQVAIKQRVLEDNLKRIGKVKAERVLTPIAGPAWHYRHRARLSARMVAKKGGVLVGFHEKSSSYIAEMRECHILPKHISDLIMPLREMIATLSISQRMPQVEVAVGDKLDILVFRNMDDITDADFAILKAFSDKHGAAERPLQIWLQPKGPDTCYPIYPLDAPKLTYSMPEFAVEMPYYPTEFTQVNPQINAVMVARALKFLDPQPGERIADMFCGIGNFTLPIARSGAVVHGMEGSQPLVRRAVENATHNGLQDKVSYEMANLFDVTEESFAALGKFDKMLVDPPRDGAVQLLKAITEETAPQRIVYVSCNPSTLARDAGVLVHTKGYTLKAAGIINMFPHTAHVESVAWFEKTGPCKTRKEVEEIEALEAAEREAAKAARLAEENAEKARKAAELAEKAAAKEARRAHYFAEKARRDAEEAASDQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Psychrobacter cryohalolentis (strain K5)
Length
513 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
57.071 kDa
Sequence
MQPTDSKTLTNVDATEQANETQTITIPPNKKKSKPSSKTRRRLKDAEPLPFTIDGLSHDGRGVAVYGNGFGETDGHITDKHGKKIFVSFALPGESALVKITNSRTSFEEGDAVRITANPNPERVVPPCPHFGVCGGCNLQHWQPDAQITFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVVKKETALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLISTLDSRDKIAQLELAMGEHLPELPDGDQPVALIVRNLEPLSDGDIDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDLSEQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTARAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKISA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Psychrobacter arcticus (strain DSM 17307 / 273-4)
Length
512 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
56.848 kDa
Sequence
MQPTDSKTSTSDTTEQPNETQTITIPPSKKKSKPSSKTRRRLKDAEPLPFAIDGLSHDGRGVAVYGNGFVEADGHITDKHGKKIFVSFALPGESALVKITNSRTSFEEGDAVNITANPNPERVVPPCPHFGVCGGCNLQHWQPEAQINFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVAKKETALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLISTLESRNKIAQLELAMGEYLPELPDGDQPVALIVRNLEPLSDADIDKLKVFFAARNWQLYLQPKGADSIQRIALTAADDLSEQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETGSVVGVEGSEAMTIRAADNARRNGINNTEFYSQDLTHDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGVMDMFCHTGHVESIARFEKVSA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acidovorax citrulli (strain AAC00-1)
Length
491 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
53.96 kDa
Sequence
MSDPTEHPEILQDPSSSAPVQGRTDLPPGWLEVTSMDMDAQGVARRPDGKVVFIDGALPFEWVSASTHRKKNNWEQASLTAIHRESPQRVRPGCPHFGLHAGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRYRARLAVRHVEKKGKVLVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDARDTCPQIELACGDDVTALVLRHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAREVVGIEGSEALVARSRENYRKNQDDRPQGQALAPATFVARNLFEMTPEMLIADGVADKWLVDPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFERV
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Polaromonas naphthalenivorans (strain CJ2)
Length
490 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
53.77 kDa
Sequence
MIEETQTPSPPAPAPAPAEYPIDLLTVESLDIEAQGIAHRADGKVVFIEGALPFEQVTANVYRKKSSFEKATLTAIYRESSQRVTPACPHFGMHTGACGGCKMQHLHIGAQVAVKQRVLEDNLRFIGKVKADNLLRPIEGPAWHYRYRARLSVRYVRKKGTALVGFHERKSAYVADMTECHVVPQHVSDMLVPLRGLISSMDARETIPQIELACGDDLTAMVLRHMEPLSVADLARLRAFAAANAGLQWWVQSGGLDTVKLLDAQVAELSYGLPEFGITMPFKPTDFTQVNPHINQVLVSRALRLLGVQPTERVIDWFCGLGNFTLPLATRAREVLGIEGSEVLVARSRENYERNKASSHVRPALEATKFVARNLFEMTPAMLVKDGAAEKWLVDPPREGAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSRIVYVSCNPATLARDAGVLVEGGGYRCTAAGVVNMFPHTAHVESMAVFERL
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Verminephrobacter eiseniae (strain EF01-2)
Length
486 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.622 kDa
Sequence
MSEPKEPSPALACAAQDGSGLPEGWLQVQSMDLDAQGVARRADGKVVFIDGALPSEWVSASTYRKKNHWEQANLTAIHRESAQRVRPGCPHFGLHAGACGGCKMQHLHMGGQVAVKQRVLEDNLWHLGRVKPAMVLRPIEGPAWGYRYRARLSVRHVIKKGVVLVGFHERKSRYVADMAQCPVLPPHAAALLMPLRSLIAALDAHDSCPQIELACGDSVTALVLRHLQPLSVGDHARLRAFAAEHGVQWWLQPRGPDTVQPLDEGGEQLSYALPDFGITMPFKPTDFTQVNPHINRVLVARALRLLAVRPDERVIDWFCGLGNFTLPLATQARAVLGVEGNAALVARARANHGLNQALAQNHRVLAATDFVACNLFAMTPGMLLGHGAADKWLVDPPREGALALVKALADIEQSRRGAQGATALPAGAEDWVPPRRIVYVSCNPATLARDAALLVHLAGYQCAAAGMVNMFPHTAHVESIAVFERG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Polaromonas sp. (strain JS666 / ATCC BAA-500)
Length
486 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
53.838 kDa
Sequence
MTDEKLNDHTVKAPEYLPDILTVESLDMEAQGIAHRADGKVVFIEGALPFERVTANVYRKKSSFEKAVVMAIHRESSQRVRPACPHFGLHTGACGGCKMQHLHVGAQVAVKQRVLEDNLWHIGKVKADNLLRPIEGPAWGYRYRARLSVRYVRKKNAVLVGFHERKSSYVADMTECHVVPRHVSDMLVPLRELIAGMDARETLPQIELACGDTVTAMVLRHMEPLSSGDLARLRAFAVSHPGLQWWLQPGGLDSVKLLDEGVPELSYDLPEFGITMPFKPTDFTQVNPHINQVLVSRALRLLAVQPHERVIDWFCGLGNFTLPLATCAREVLGIEGSEALVARSCQNFKKNQPASQSRSALSATEFVARNLFEMTPAMLVKDGMADKWLVDPPREGAFELFKSLAALHQQMVTGVPCDDGEQQQSLVLGDWTPPQRIVYVSCNPATLARDAGVLVESGAYRCTLAGVVNMFPHTAHVESIAVFERG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Cellvibrio japonicus (strain Ueda107)
Length
485 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
53.445 kDa
Sequence
MAYKKPGFLGKKPVPHGKGAGRDPYVRDDSPRLTAPRREQPQPLQRNKRLGELLIDRFSHDGRGLASLDGKTLFVDGAIAGETVTARLLEDHPRFAEARVEDVILASPDRVEPPCAHYATCGGCQLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRARLGVWYEADSSVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQARVANKAVTHIELVAAQSGPAVIVRHTKPLVALQRQALAELAQRESCQVWLEPNGNQGLTDLEGSPVDPHLVLDVAGLPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDSPRLRQLCSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVMDMFPHTSHVESMALFLYKQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
Length
483 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.518 kDa
Sequence
MTGLGKRRPARSRSGVSGLRERRQPASVERSAGSEGRRELVIQGLAHDGRGVARDVDGKTVFVEGALPGERVQASVHRRRKRFDEAHVSEVIAASASRVAPPCRHYGSCGGCDLQHLSLEAQRDHKREVLRELLARQGIELPGASSLLADAGEGYRRRARIGVRVDSNGQVRLGFRARHSHRLVDLDDCPVLLPALSSLLRPLREQVESLEAPRHVGHLELLASDGAVTLVVRQLREHVADQRRWRAFAEAQGLHLGAWLGRESPRFEWLTPPPALHCRLTAGRRTLVLGLEPSDFLQANEAVNQRMVDTALSWLAPALSPVAPGTRVLDLFAGIGNFSLPLATQGAEVSAVEGSTAMVERLAGNAARNQVAVTARQADLNDAEACRRLLATTAPEVLVLDPPRSGAEALCRQLVEHPVPWVLYISCDPATLARDAAWLVSAGYVVRRSAVADMFAHTSHLESMLLLEHPDSARRQQGASTDG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acidovorax sp. (strain JS42)
Length
482 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
53.057 kDa
Sequence
MSDPTEFSPPPPTSTDLPPGWLEVTAMDMDAQGVARKPDGKVVFIDGALPTELVSANTHRKKNNWEQASLTEVHRQSSQRVQPGCPHFGLHAGACGGCKMQHLHVAAQVAVKQRVLEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRYVPKKDKVLVGFHERKSRYIADMETCKILPPHVDAMLMPLRALIGSMAARDTCPQIELACGDTVTALVLRHLEPLSPEDKDKLRAFAAVHGVQWWLQPKGPETVHLLDEGGEPLAYGLPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDARKDERVIDWFCGLGNFTLPIATQAREVLGIEGSEALVARSRENYQSNQAQRQDGSALAATSFVARNLFEMTPEMLIADGASDKWLVDPPREGAFALSKALADIHQARIGAEDAPPLPAGHEGWQPPRRIVYVSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFERG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)
Length
482 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.67 kDa
Sequence
MANLFKQSRAKQKNKTTPSQTQTSTKGSARANAQVAGLRFKKSKQSKEHNTAQDANNNAITIQELDWMGQGVARGATMYFVEGALPGETCDIEVVSSKKKVVSAKTISIQGPSELRQPPFCPVFEACGGCQLQHIDADAALAYRDNALKIMMERQLSIGSGVWQAPLVGPRPQYRRKARLAIDARNPDNIKLGFREANSNKVVNLDTCPILVNPLSTAIGPLRNALEGYDSARHIGHISLIAGDNRAQVVIKHTKALEDALIETVDAFAKALGLDVVLENKQGRLRSVGEAQGLIMHTVDGCSISPSANDFIQINKVVNEKMINQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALVQAIEGVAEMVLRAKDNAQQQGIENVEWLHLDLANKANVEASLQQGFDKVLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPFTHHMEMMALFTQRQQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)
Length
477 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.856 kDa
Sequence
MTDDMHKTENFPPDWLLVESLDLEAQGVAHRADGKVVFIKGALPFELVSANVHRKKNNWEQGVVTAIHRESSQRVQPGCPHFGLHEGACGGCKMQHLHVGAQVAVKQRVLEDNLWHLGKVKADTILRPIEGPAWGYRYRARLSVRYVRKKGELLIGFHERKSGYVADMKECPVLPPHVSDLLLPLRALISAMEAMETCPQIELACGDSVTALVLRHMEPLTHGDLALLRGFAAQHAGVQWWLQPNGPETAHLLDEGGQALSYDLPEFGIHMPFKPTDFTQVNPHINRVLVSRALRLLDAKRHERVIDWFCGLGNFTLPIATQAREVLGVEGSEALVARSRQNFKLNQALAPVNKSLAATNFVARNLFEMTPELLIQDGAADKWLVDPPREGAVSLVQALAELHQQKLDPIGHPPIVGAVGWMPPKRIVYVSCNPSTLARDADLLVHQAGYRCSFAGVVNMFPHTAHVESMAVFDLEV
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Bordetella avium (strain 197N)
Length
476 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.584 kDa
Sequence
MVDEVLKIESLDLEARGIARRDGKVVFVEGALPGERVYAATVRRKPSYEIARVETVLTPSSQRVEPRCPHFGVCGGCAMQHLEPTSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRPERIPQIEVALGEGVTALVLRHIEPLNDHDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDTLAYTMPEFGLRMPYRPTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGYFDRMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKAAGVINMFPHTGHVESIAVFESLADDEVLHVQQQARLKAELAAQEAAEATVQAGAASEQPA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)
Length
475 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.156 kDa
Sequence
MAMLGKRRPPRTANERVRRERGSATRRDDATADGLSIERLAHDGRGVARDPHGKTVFVDQALPGERVRVAVHRQRKRFDEAHVVERLATSPERATPPCAYYGRCGGCDLQHLDLEAQREHKRRTLDELFTRQGLTLPEIEVLAGEGLAYRRRARLGVKCDAEGTPHLGFRARGSEHLIDIDSCVVLEPVLSRLIAPLRACLVQLEAPRRVGHIELIATAEGACVVVRQLREVPGDEARWRRFAAEHDVTLAWRVGREAPTLRWLHAPRGEALHVTLVLDDTTLSLGCVPGDFLQINADVNARLVRTALAWLAPRGEERVLDLFAGVGNFTLALAPRVASITGIEGSPAMVERLADNARRAGLHQVGAQQSDLATQVPEVAAVDWVIMDPPRGGAEALCRALADSPVTTLLYVSCDPAALARDAARLVQGGYRIQRAALADMFPHTAHLESMLLLTRDTPRGRSTSVEREDHGQGP
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Polynucleobacter necessarius subsp. necessarius (strain STIR1)
Length
475 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.975 kDa
Sequence
MHRGDKPVNIEVAEPITVEVLDLDAQGIARLAPSEEEAAQDQSGKVIFIKGALPTELVTYTVTSDKSRFSKAKVREILKPAVFRAEPKCAAFGICGGCTMQHLDIRAQVAMKQRVLEDDLQHIAKVKSEEILCPMGGPTWEYRHRARLSAVNRSIKKGTVLIGFHEGKSGYVADMLACEILPKHVSDLLPEMRKLVMGLSIVDRMPQIEIAIGEPEDAQSDDPQKSKPVTALVFRNLKPLTTEDEQLLRAFADQHEVWIWLQPKGIETIAPFYPLTGKLCYRLPEFEIEMPFKPCDFTQVNHMMNRALVSRAIRLLEVQPTDRVLDLFCGIGNFTLPLARKAKQVLGIEGLESLTARAKSNAQHNGLSDKASFMQSDLFEVTSETVASWGGAERWLMDPPRKGAMDICKALAELHLQQSDLLPERIVYVSCNPKTLARDVEILCHQAGYRLSSAGIINMFPHTSHVESMVVFDRA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Rubrivivax gelatinosus (strain NBRC 100245 / IL144)
Length
473 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.565 kDa
Sequence
MSSGMDWLQVESLDLEAQGVAHRADGKVVFIEGALPGETVQVQVSRRKNQWEQGVLSALARESSQRVRPGCPHFGLHAGACGGCKMQHLHPAAQVAVKQRVLEDNLWHLGKVKPERLLRPIHGPAWGYRWRARLSVRYVPKKGVVLVGFHERKSRYVADMLECPVLPAKVSAMLPALRELIGAMEQRDRLPQIELAAGDEVIALVLRHLEPLSAGDAARLRAFGAEHGVQWWLQPKGPETVHRLDEGGPQLAYSLPEYGVTMPFKPTDFTQVNPQINRVLVDRAVRLLAPQPHERIVDWFCGLGNFTLPLARRAAAVHGIEGSETLVQRARENAAANGLAANTSFAARNLFEMSADELMTSGAADAWLVDPPREGAFALAKSLAELRGREGWTPPRRIVYVSCNPATLARDAGLIVHLAGFRCVAAGVVNMFPHTAHVESIAVFERSEAALSPRPVGEAAPELAAEPAPDAVA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Alteromonas naphthalenivorans
Length
473 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.345 kDa
Sequence
MAIFYKPSKGKNKSNVKGRVRGAGSGEKQHIVKTKQSWPSVDDINAANEAVTIDGMDWQGQGVARGDTLYFVDGALPGETVEIKALSSNKQIVNAKVTKVNTPSEHRQKPFCGVANQCGGCQLQHVEPQEALALRDDALKSMFQRKLGFNEGAWQAPVSGNRPRYRRKARLAIDARNPDKIKLGFRENAGKNIVDIEGCPVLVESLSQLIAPLKSAITGYASARLVGHVSLLAGENAVQVTVKHTRSLANDFIASLSQFAVEQNVNMTIEDGNGEFTHLHEIAPITCNTVDGFYLQPGPNDFVQVNAEVNTKMVAQALSWLAPKAGERIADWFSGLGNFTLPIANSGATVSAVEGVAEMVQRAKSNALEQGITNVDWMQLDLADEKSVDKALAGGFDKVLLDPSREGALTVCHALVRATPNTIVYVSCNPNTFSRDARVLIDGGYQMQKAGVVEMFPFTHHMETMALFTRQQQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Paraburkholderia xenovorans (strain LB400)
Length
472 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.414 kDa
Sequence
MSRTAPHRRAPKRYKTPPPAPAHVVTGNEPVIEIISLDMEARGVGRTETEDGTPGKVIFVEGVLPGERVSYSTHRSKPKFEQAEVVQVLRESVMRTKPKCTYFDICGGCSMQHLDIRAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPSWGYRYRARLAVRFLPEKGGMRIGFHEKKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIYDRMPQLELAVGSSVTALVVRNLEPITAADEQVLRDFADEHKVQFWLQPGGPDTVTPFYPLDVQLDYTLPEYGIRMPFKPTDFTQVNHAINRVLVSRALRLLAPARTDRVLDLFCGIGNFTLPLARISKEVMGIEGSEVLTSRALANAGLNGVAGHTSFECRNLFEVTADDLRALGHFDKFLIDPPREGALAVAKALAEIARSGNGPLPKRIVYVSCAPATLARDAGLLVHEAGYRLVGAGVVNMFPHTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Length
469 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.27 kDa
Sequence
MANYFKAAVKPKTSNQRLTVTVDKLDMNGVGVARWQNKPIFIAGVLPDEIVDVKVIEQKSKYARAKLISIDKQSASRVIPQCQHFGLCGGCDLQMLALEEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIKSSPWHYRRKARIGVQFDKNAQATIGFRQKSTNQLAAIKSCPVLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQADISDTSSADKIQKDNQVVVVVRQLKPMNDTDIGLWQLYAQRHCWHVIIDDGNKQLPLADIKGGDSFELSYELTDTSKVYFSSNDFIQINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLDNCQFYQADLNSHWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPCVLYVSCDPATLARDSAILVSKGYKLEKISLMDMFSQTKHVETMILFTHTS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Length
468 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.338 kDa
Sequence
MAQFFKEKANKSKQLSPKLSLNVTQLDHLGAGMAQHQGKVVFIPQALPGERVSVQLTDQKKSFAKAKLIKIEQQSPERADASCPHYGHCGGCDLQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYRRRARLATYFNNNDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKASLGHLELTQADNGTFAVLRVTKVLPAADIRALASFALTQGINLLLQDDSGALTDVMTMAPAEDEGATQVEQSALTLPEYALSQGQVSCQFTPGNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDLFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHADLSADLSNEKWLGKIDKLLLDPARAGAFESLQWLQKMKPKKVVYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFEIAT
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)
Length
466 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.058 kDa
Sequence
MSSQPNPTSHPEAASAASAASNDPVVKIDSLDMEARGVGRLENEDGTPGKVIFVEGALPGETVAYRSYRRKPSYEQAHLVEVKQASVMRVKPGCQHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVVKKGGVLVGFHERKSSYVADMTHCEILPPHVSAMLVPLRELVGGLSIHDRMPQIELAVGAEVTALVLRVLEPLNDADKDLLRAFADQHQVQFWLQPKGPDTVYPFYPAEQELAYTLPEFGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAKPTDRLLDLFCGIGNFTLPLATQGASVMGIEGSEVLTTRALANAEYNGLAAKTSFACRNLFEVTAEDIAALGRFDRWLVDPPREGALAVCKALAELSQAGSDVLPKRIVYVSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESIAVFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Photobacterium profundum (strain SS9)
Length
466 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.495 kDa
Sequence
MARFFKPQKRKITDTKHKEIVINRLDHLGAGIGHLNNKSIFVDGLLPGEKALVQITDDKKQYARAKVIKRLIDSPARIKPHCPIYDQCGGCNLQHLSHQGQVLAKQQALSDLMVKFAGDQQVAVDKQRAGDQQRALFEQVTPIIAAEHHYRRCARFSVLLGKDGQLQFGLRKKQSKDIVNVKQCPVLAESLNELLPPLRSLLSTLKGQRHLGHIELIEADNGRVVLIRHLKPFSDKDMTLILNFAQEQNVILFLAPTSDDIELIHGETPYYRLDDLTLHFSPKDFIQVNRDVNKKMVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVHRATENAMCNKQNNATFYQANLDEDVTKLAWAREPFNKILLDPARAGAAGVMEHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHLESMALFVKAKAVKKKRVVTKL
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Length
466 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.25 kDa
Sequence
MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKPSYEIAKVEEILRPSSQRVAPRCPHFGVCGGCAMQHLAPAAQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSAPDRMPQIEVALGDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQSKGPDTVHPLEREHADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAERLAEAAAA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
Length
466 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.278 kDa
Sequence
MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKPSYEIAKVEEILRPSSQRVAPRCPHFGVCGGCAMQHLAPAAQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSAPDRMPQIEVALGDEAIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQSKGPDTVHPLEREHADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVVQALSLLAPGERPRRIVYVSCNPGTLARDAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAERLAEAAAA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Length
466 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.239 kDa
Sequence
MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKPSYEIAKVEEVLRPSSQRVAPRCPHFGVCGGCAMQHLAPAAQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPPAVSRLLLPLRAMIAAMSAPDRMPQIEVALGDETIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQSKGPDTVHPLEREHADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALTDRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCSPGTLARDAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAERLAEAAAA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia cenocepacia (strain AU 1054)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.091 kDa
Sequence
MSEAVPTSARKSKNAPVAPGPAPVLEIESLDMEARGVGRTMTEDGEPGKVIFVEGALPGERVTYSSYRRKPSYEQATVVDILRPSVMRTQPKCTFFGTCGGCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSIRDRMPQIELAVGSTVTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGALAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia cenocepacia (strain HI2424)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.091 kDa
Sequence
MSEAVPTSARKSKNAPVAPGPAPVLEIESLDMEARGVGRTMTEDGEPGKVIFVEGALPGERVTYSSYRRKPSYEQATVVDILRPSVMRTQPKCTFFGTCGGCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSIRDRMPQIELAVGSTVTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVSLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGALAVSKALAEIAQSGAGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.002 kDa
Sequence
MSEAVPTSARKSKNAPVAPGPAPVLEIESLDMEARGVGRTVTEDGTPGKVIFVEGALPGERVTYSSYRRKPSYEQATVVDILRPSVLRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSIRDRMPQIELAVGSQVTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTSHVESIALFERG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.111 kDa
Sequence
MSEAVPTSARKSRNAPVAPGPAPVLEIESLDMEARGVGRTITEDGEPGKVIFVEGALPGERVTYSSFRRKPSYEQATVVDILRPSVMRTKPKCAFFGTCGGCSMQHLDMRAQVAVKQRVLEDNLWHLAKLRAETMFAPIHGPSWGYRYRARLTVRNVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSIRDRMPQIELAVGSEVTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVAPFYPLDVSLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDIRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPNTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia mallei (strain ATCC 23344)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.03 kDa
Sequence
MSEAVPLSTRRASSAGDAPGRAPVLDIDSLDMEARGVGRVVDENGEPGKVIFVEGALPGERVTYSSFRRKPTYEQAQVVDILRPSVMRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQLSIRDRMPQIELAVGARVTALVLRVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRALGAFDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia pseudomallei (strain 1710b)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.03 kDa
Sequence
MSEAVPLSTRRASSAGDAPGRAPVLDIDSLDMEARGVGRVVDENGEPGKVIFVEGALPGERVTYSSFRRKPTYEQAQVVDILRPSVMRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQLSIRDRMPQIELAVGARVTALVLRVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRALGAFDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia pseudomallei (strain K96243)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.03 kDa
Sequence
MSEAVPLSTRRASSAGDAPGRAPVLDIDSLDMEARGVGRVVDENGEPGKVIFVEGALPGERVTYSSFRRKPTYEQAQVVDILRPSVMRTQPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQLSIRDRMPQIELAVGARVTALVLRVLEPINAADEALLREFADTHRVQFWLQPKGPDTVAPFYPLDAQLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSDALTARALENAKENGVDGHTSFACRNLFEVTADDLRALGAFDKFLVDPPREGALAVSKALAEIAQSGAGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264)
Length
465 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.981 kDa
Sequence
MSEAVPLSTPGASHAGAATDRAPVLDIDSLDMEARGVGRAVDENGEPGKVIFVEGALPGERVTYSSFRRKPTYEQAQVVDILRPSVMRTRPKCAFFGTCGGCSMQHLDMRAQVAIKQRVLEDNLWHLAKLRAEAMFAPIHGPSWGYRYRARLTVRHVAKKGGVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEQLSIRDRMPQIELAVGSQVTALVLRVLEPINAADETLLREFADAHRVQFWLQPKGPDTVAPFYPLDVQLDYTLPEFGIRMPFKPTDFTQVNHQINRVLVGRALRLLAPERGDRVLDLFCGIGNFTLPLARLAREVVGIEGSETLTSRALANAKENGVDGHTSFASRNLFEVTADDLHALGAFDKFLVDPPREGALAVSKALAEIAQSGEGPLPARIVYVSCNPSTLARDAGLLVHEAGYRLKGAGVVNMFPHTSHVESIALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Cupriavidus necator (strain JMP 134 / LMG 1197)
Length
463 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.045 kDa
Sequence
MPAAPRAASASPAAVAPGSDPVVSIDSLDMEARGVGRLVNEDGTPGKVIFVEGALPGETVSYKSFRRKPSYEQAHLLEVRRESVMRVKPGCKHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVRPEVMFRPIAGPDWGYRYRARLTVRYVAKKGGVLVGFHERKSSYVADMTSCEILPPHISAMLVPLRELVTGLSIRDRMPQIELAVGHEVTALVLRILEPLTDADKDLLRAFADQHNVQFWLQPKGPDTVVPFYPLDRELAYTLPEFGIRMPFKPTDFTQVNHHINRVLIGRALRLLDVQPQDRLLDLFCGIGNFTLPLATQGRSVMGIEGSEALTTRALANAGYNGLAEKTEFACRNLFEVTAEDIAALGRFDRWLIDPPREGALAVCKALGELSQQGSDVLPQRIVYVSCSPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESIAVFERR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Length
463 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.204 kDa
Sequence
MKKHASSRSKSATVYTFRIESFSHEGRGIAHFGEFAEHPQTKHGKKVFVRYALPGEVVRAKITHETKRFEEGELIEILDQPSIDRIVPVCPHFGVCGGCSMQHITPNQQIQIKQHVLASHLQHFAGLTVNEWLTPVRSLRADYRRRARVGVRYIPAKQKLIMGFREHGSNRLTPIQSCAVLDQRLSQALPELYDVLNRLVAKAEIGHIELAMGDDEVSLLVRHLNTLPDSDITQLCDYAQHKNWQLYLQAKGSDSLKRVDRSGAEMRLHYAVPAFNLNFAFSPLDFTQVNATVNQQMLKLACDLLKLQKGEHVLDLFCGLGNFSLPLARCVGDTGRVVGVEGSEEMVQRAFENAAQNALHNVEFYSQDLTKDFSHHSWANQGFDALLIDPPRSGAFEIMHYIANFEAKRIVYVSCNPATLARDAGVLAQHGYQLKKVGVMDMFTHTEHVESIALFEKIQEIND
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acinetobacter baumannii (strain AB307-0294)
Length
463 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.486 kDa
Sequence
MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKAQITHEAKRLEEAEMVELLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIHLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSVLDKKLSDNLPELRNLLQSLKGKAHIGHVELAKGDHEISLLVRHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acinetobacter baumannii (strain ACICU)
Length
463 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.381 kDa
Sequence
MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKAQITHEAKRLEEAEMVALLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQICLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQSLKGKAHIGHVELAKGDYETSLLVRHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acinetobacter baumannii (strain SDF)
Length
463 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.431 kDa
Sequence
MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKAQITHEAKRLEEAEMVALLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQSLKGKVHIGHVELAKGDHETSLLVRHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVIVGVEASEEMVQRATDNVKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIIQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acinetobacter baumannii (strain AYE)
Length
463 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.486 kDa
Sequence
MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKAQITHEAKRLEEAEMVELLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIHLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSVLDKKLSDNLPELRNLLQSLKGKAHIGHVELAKGDHEISLLVRHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acinetobacter baumannii (strain AB0057)
Length
462 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
52.446 kDa
Sequence
MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKAQITHEAKRLEEAEMVELLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIHLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSVLDKKLSDNLPELRNLLQSLKGKAHIGHVELAKGDHEISLLVRHIEKLNNADVNQLRQFALHKGWQLYLQPKDQSLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGQVVGVEASEEMVQRATDNAKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIMQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas fluorescens (strain Pf0-1)
Length
461 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.407 kDa
Sequence
MAKHERGLRFQPTGGSKAPQIPTGKKQRLSIERLANDGRGIAFFEGKTWFVLGALAGEEVEARVLGAHGKVVEARTERVFSASELRRPAPCQHAGRCGGCSVQHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKAKKLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLSKPQALGHVELFSGSSLAVLLRHMAPLSEADLTILKDFCAFHEAQLWLHGEGEPQPVDDAQSLGYHLEQWDLQLAYRPGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREVVAVEGVQTMVDRAAANAASNNLHNTKFFQADLSQPLTDAEWIGNGFSAVLLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTAHVEAMALFEASQDGSSDPTGRP
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella frigidimarina (strain NCIMB 400)
Length
455 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.796 kDa
Sequence
MAQFFQAKPNKSKQLSAKLSLSVTQLDHLGAGIAQHQGKIVFIPGVLPGETATVQFVEQKKSYAKAKLISIESASVNRIKPHCPHYQQCGGCDLQHMDTNAQREHKQTALVDLISKLSSAKAIDADIVADPIVGEAWHYRRRARLATLFDKNTQRLQLGFRAGNSNKIVSIQQCPVLSESLSALITPLAANLNQLKAKASLGHVELTQADNGNFAVLRVTKVLPASDIRWLTGFAEKHQLNLLLQDDAGQLTQLFPLLPAGDEAIALPYYHLAQEAVRCSFTPGNFVQVNGAINQAMVDQAIEWLDPQSGERILDLFCGVGNFSLPLALKAAEVIGVEGVPEMVQQAKQNAIDNQLDNVTFYHADLSADLSTQTWLGKIDKLLLDPARAGAFESLQWLQKMQPKKVVYVSCNPASLARDSSVLLASGYRIAQVGLVDMFPQTHHIEAMVLFELNI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Neisseria lactamica (strain 020-06)
Length
452 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
51.034 kDa
Sequence
METEVNVAEISALDYEGRGVTKVGGKTVFIKGALPSERVGFRIVRQKKQFDEAEAVAIFKVSDERTVPQCRYFERCGGCSLQHISPAAQVAFKQRMMEEQLERIGKVKPKQILLPIYGHVWHYRDRARFSVSLDKLCRLKLGFQAKKTNDVVDISSCMLLPKPVSDKLSAIRGLLQDLAEEGSVARFAEFYRGSEITVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFYPKTDKTLKYTLPEFGIEMPFRPGDFTQINTDTNRLMVSRVVKMLDIRRGERIADLFCGLGNFSLPMAKSGADVVGIEGAENLVRRARQNARLNGCDRQTDFIAANLFDCTEKTVASWERFDKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYMLSQAGIMNMFAQTSHTESVAVFDLLPQTGKNFLKIKGKD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas entomophila (strain L48)
Length
452 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.42 kDa
Sequence
MSRKKSNGGLRFQPAGGNRATQIPVGKKQRLLIERVAGDGRGIAFIEGRTWFVSGALGGEEVEARVLGARGKVVEARLERVFQASPERREAPCRHYARCGGCNLQHLPHDGQLALKQRLLAEQLQRVAGVQPEEWAAPLCGPEFGYRRRARVAVRWDVKQRQLDVGFRAEASQDIVAIDDCPVLVQPLQAIMRHLPTVLRSLSKPQTLGHVELFSGTAEAVLVRHVAALPAEDLARLEAFCREAGAQLWLQGEGDPAPVDAAQRLGFALEPWGMELAWRPGDFVQVNAQVNTLMIQQALAWLAPQAHERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAEANAHGNNVYNARFFQADLSQPLAGAEWVAEGFSAVLLDPPRDGAYEVVQGIARLGAKRLVYVSCNPATLARDTQVLVGQGYRLKRAGILDMFPQTAHVEAMALFEAG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Length
452 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.254 kDa
Sequence
MSKKKSNSGLRFQPAGGNRTPQVPVGKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGPEFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLSKPQALGHVELFSGTAEAVLVRHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFFQADLSQPLAGTGWAAEGFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILDMFPQTAHVEAMALFEAG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Length
451 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.489 kDa
Sequence
MAKHERGLRFQPAGGVKTVQIPAGKKQRLTIERLSDDGRGIAFLEGKTWFVAGSLAGEEVEARVLNARGKVVEARTERVFTASTMRRAPACEYFGRCGGCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKNFSKPQALGHVELFSGVATAVLLRHTAPLAEADLALLQAFCSKHGAQLWLHGEGEPQPVSPGDTLGYRLEPWNLQLAWRPGDFIQVNAAVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLAREVVAVEGVATMVERAAVNAMSNDLHNVQFFQADLSQPLTHADWAAEGFSTVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDTVELISQGYRLKRAGILDMFPQTAHVEAMALFEMSK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Length
451 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.333 kDa
Sequence
MAKHERGLRFQPTGGVKSVQIPAGKKQRLSIERLSDDGRGIAFLEGKTWFVAGSLAGEEVEARVLNARGKVVEARTERVFVASDLRRAPACDYFGRCGGCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVSIEECPVLVQALQPIMSQLPAMLKSFSKPQVLGHVELFSGSSTAVLLRHTAPLAEADLATLQAFCKTHGAQLWLHGEGEPQPASPGDTLGYRLEPWNLQLAWRPGDFIQVNAAVNTAMIEQALHWLAPAADERVMDLFCGLGNFALPLASLAKDVVAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQPLTHADWAAEGFSAVLLDPPRDGAFEVVRQIRKTGAQRLLYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVEAMALFEVSK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas syringae pv. syringae (strain B728a)
Length
451 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.508 kDa
Sequence
MAKHERGLRFQPAGGVKTVQIPAGKKQRLTIERLSDDGRGIAFLEGKTWFVAGSLAGEEVEARVLNARGKVVEARTERVFTASAMRRAPACEYFGRCGGCSVQHVPHEEQLALKQRMLAEQLLRVANVVPDEWAAPLSGAELAYRRRARVAVRWDAKAKRLDVGFRAAASQDIVSIEHCPVLVQALQPIMNELPGMLKSFSKPQVLGHVELFSGVATAVLLRHTASLVEADLALLQAFCSRHGAQLWLHGEGEPQPASPGDTLGYRLEPWNLQLAWRPGDFIQVNASVNTAMIEQALQWLAPAKDERVMDLFCGLGNFALPLAGLARDVVAVEGVATMVERAAVNAMSNDLHNVRFFQADLSQPLTQADWAAEGFSAVLLDPPRDGAFEVVRQIRKTGARRLLYVSCNPATLARDAVELIRQGYRLKRAGILDMFPQTAHVEAMALFEMSK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.443 kDa
Sequence
MAQFFKPQKRNKSVSKTLKGQVSALDHQARAVVRAAVKGQSTRFIMGALPGEVIEYKTAGKHSGHLERILEPSSDRREVPCEYYASCGGCDFQHIDEQKQLAHKRQVVEELFQKFGVFNPQTSSLPWQEPLVSEPMRYRRRVRLATRWLGKEQKLLIGFREAQSHHIVPIEDCLVADEILLHCVNTLYPLLNTSTVASKLGHIEAINTNTPVILLRITEALPGDAMQALQEWQTVNKTNIWLQSENDLQPLAGAAMPFDTSIDGDKLYFQPGDFLQVNGGINQRMVQQAMDWLKPEKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMAEQTRINAESNGMDNLSSLSADLNEITASDLGKPADLWCLDPARPGAEGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAGMLTESKGCNYRIIGLSTVDMFPQTHHIETMVCLERAS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.726 kDa
Sequence
MAQFYSPNRRVTTRKAVPAKNLTVTVASLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLTEEKRQFSHAKLKRLLTPSPQRVEPPCPHFTRCGGCQQQHAEITLQQSSKTAALMRMMTRETGIELSAASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQPLRDCLSQLSAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAQRQGVSVYLAPDAESLTCLHGEEPVYHVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQSQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWAAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGYRLANVAMLDMFPHTGHLESMALFLHDTGMRKAQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella baltica (strain OS223)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.079 kDa
Sequence
MAQFFKAKPNSSKQLSAKLSLSVNQLDHLGAGIAQHQGKVVFIPGALPDETVTVQLTEQKKNYARAKLIKVDTPSSERVAPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDDKAESDAVSLSFTPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHIEAMALFELTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella baltica (strain OS155 / ATCC BAA-1091)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.243 kDa
Sequence
MAQFFKAKPNSSKQLSAKLSLSVNQLDHLGAGIAQHQGKVVFIPGALPDETVTVQFTEQKKNYARAKLIKVDTPSSERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPELTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLTAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDDKAESDAVSLSFTPGNFVQVNGQINKAMVAQAMDWLAPALDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNLDKLTFFHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHIEAMALFELTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella baltica (strain OS185)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.046 kDa
Sequence
MAQFFKAKPNSSKQLSAKLSLSVNQLDHLGAGIAQHQGKVVFIPGALPDETVTVQLTEQKKNYARAKLIKVDTPSSERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGTLSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHLIHICLQDNEGQFQGVGAELVLPVYQLLGDKAESDAVSLSFTPGNFVQVNGQINKAMVAQALDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHIEAMALFELTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella baltica (strain OS195)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.107 kDa
Sequence
MAQFFKAKPNSSKQLSAKLSLSVNQLDHLGAGIAQHQGKVVFIPGALPDETVTVQLTEQKKNYARAKLIKVDTPSSERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGAEGGALSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHQIHICLQDNEGQFQGVGAELVLPVYQLLDDKAESDAVSLSFTPGNFVQVNGQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVTQARVNAKANNLDKLTFYHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVVYVSCNPASLARDSAVLLERGYRLQQLGLIDMFPQTHHIEAMALFELTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.343 kDa
Sequence
MAQFFKAKPNSSKQLSAKLSLNVDQLDHLGAGIAQYQGKVVFIPGALPDETVTVQLTEQKKNYARAKLIKVDAQSPERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDENAQSDAVSLSFTPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSTVLLERGYRLQRLGLIDMFPQTHHIEAMALFELTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella sp. (strain W3-18-1)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.313 kDa
Sequence
MAQFFKAKPNSSKQLSAKLSLNVDQLDHLGAGIAQYQGKVVFIPGALPDETVTVQLTEQKKNYARAKLIKVDAQSPERVEPECPHYHTCGGCDLQHMSLSGQREHKEAALLDIMAKFAGTEGGALSPALTGEGWHYRRRARLATLFDKNTKHLSLGFRAASSSNVVPISQCQVLAKPLSDLIVPFAKLLNQLSAKASLGHLELIAADNGHFAVLRITKALNDKDLAKLSAFAEQHQIYICLQDNEGQFQGVGVELVLPVYQLLDENAQSDAVSLSFTPGNFVQVNSQINKAMVAQAMDWLAPAPDERILDLFCGMGNFSLPLAKMGADVIGVEGVAEMVSQARVNAKANNLDKLTFYHGDLSADLSLEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRKVLYVSCNPASLARDSAVLLERGYRLQRLGLIDMFPQTHHIEAMALFELTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas aeruginosa (strain UCBPP-PA14)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.071 kDa
Sequence
MARNKGGLRFQPSGGARGPAIPVGKKQRLTIERLAHDGRGIAHEAGMTWFVSGGLPGEELEARVLGARSKVVDARSERLFSSSDLRRREPCTVAGRCGGCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARARRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTASALLLRHTTALVDEDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAELGYSLGDWQLTLAYRPGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDMFPQTAHVEAMALFEAG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.071 kDa
Sequence
MARNKGGLRFQPSGGARGPAIPVGKKQRLTIERLAHDGRGIAHEAGMTWFVSGGLPGEELEARVLGARSKVVDARSERLFSSSDLRRREPCTVAGRCGGCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGYRRRARIAVRWDARARRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTASALLLRHTTALVDEDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAELGYSLGDWQLTLAYRPGDFVQVNAPVNESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANALANGLGNAHFFQADLSKALAEAPWAEQGFTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGILDMFPQTAHVEAMALFEAG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.118 kDa
Sequence
MAKHDRGLRFQPAGGSRAPQIPVGKKQRLTIQRLANDGRGIAFVEGRTWFVSGALAGEEVEARVLGSHGKVVEARAERIFNASDLRRPAACAHAGRCGGCSVQHLPHDEQLALKQRMLAEQLSKVAGVEPEAWAAPLSGPEFGYRRRARVAVRWDAKGKQLEVGFRAAGSQDIVAIDDCPVLVQALQPVMNRLPAMLRRLSKPQALGHVELFSGSALAVLLRHMAPLSDSDLTILKDFCDFHQAQLWLHGEGEPQPFDPSQALGYRLETWDLHLAYRPGDFVQVNAGVNEAMVAQALEWLAPQADERVLDLFCGLGNFALPLARQVREVVAVEGVATMVARAAENAASNNLHNTRFFQADLSQPLSAAEWADEGFSAVLLDPPRDGAFEVVRQLATLGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTAHVEAMALFEAS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Ralstonia pickettii (strain 12J)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.488 kDa
Sequence
MPVAGPLDIVSLDGEARGIGRLTNEDGTPGKVVFVEGALPGERVMYRSHRVKPSYEQAGVVNILRQSASRVTPQCKFFGVCGGCSMQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQRMPQIELAVGQDVTALVLRNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDRTLTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRAREVMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAALGKFDRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESMAVFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Ralstonia solanacearum (strain GMI1000)
Length
450 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.266 kDa
Sequence
MPVAGPLEIVSLDNEARGVGRLSNEDGTPGKVVFVEGALPGERVTYRSHRAKPSYEQATLVDILRQSASRVTPQCRFFGTCGGCSMQHLDSRAQIAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAKGGVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIVQRMPQIEVAVGQDVTALVLRILEPLTSADEAELRAFADRHAVQFWLQPKGPDTVYPFYPLDRALTYTLPEFGITMPFKPTDFTQVNHQINRVLMSRALKLLDARPGDRLLDLFCGIGNFTLPMATRGCEVMGIEGSEALTTRALANAQHNGLDGKTTFACRNLFEVSADDIAALGRFDRWLVDPPREGALAVSKAVAELSQRGGEAAALLPGRIVYVSCNPATLARDAGLLVHEAGYRLAGAGVVNMFPHTSHVESIAVFERA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Francisella tularensis subsp. tularensis (strain FSC 198)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.91 kDa
Sequence
MGRSRHHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAKVVEYVKKSSNRVNPPCDHFQICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVESIAVFEKI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Francisella tularensis subsp. holarctica (strain LVS)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.863 kDa
Sequence
MGRSRYHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAKVVEYVKKSLNRVNPPCDHFQICGGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVESIAVFEKI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Francisella tularensis subsp. novicida (strain U112)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.925 kDa
Sequence
MGRSRHHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAKVVEYVKKSSNRVNPPCEHFQICGGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQQNNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTATLARDAGILVNNKDYKLISAGVMDMFPHTMHVESIAVFEKI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Francisella tularensis subsp. holarctica (strain OSU18)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.863 kDa
Sequence
MGRSRYHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAKVVEYVKKSLNRVNPPCDHFQICGGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVESIAVFEKI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.91 kDa
Sequence
MGRSRHHNKLKEGIFEAEITALSHDGRGIAKVDGKTTFIPFTLPGEVVKFEYTFTKAKFDEAKVVEYVKKSSNRVNPPCDHFQICRGCSLQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKGKILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQHIAQLEIAIDDTRPAMIVRHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNFEYNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVESIAVFEKI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.537 kDa
Sequence
MSKRRRKVLPKEPVRCEIETLSHDGRGIARADGKTQFVDGALPGETVMAKMVRTRSRFDELRTTEVLEAAPDRQQPPCEFADLCGGCSLQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRKARLGVRYVKARESVLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLHGMAAFDRIAQVEVACGDDTAAMVFRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTVHRIWPESGGRDDERLTYRMDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPGERVLDLFCGLGNFTLPLARKGGQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADLHGDFTGQSWAKEGFDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDMFPHTTHVESIALFERSAD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.634 kDa
Sequence
MAQFYSPNRRVTTRKAIPAKNLTVTVTSLDPFGQGVARHEGKTVFVTGVLPGEQAEVQLTEDKRQFSHAKLKRLLTHSPQRVEPQCPHFTRCGGCQQQHADITLQQSSKTAALMRLMTRETGAELPDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQPLRDCLSRLKAVKRLGHVELVQAENGPLLVLRHLDPLHPADEQALRDFAEQQGVSVYLAPDADSLTCLHGDEPVYLVAGLTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWVAQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLDMFPHTGHLESMALFLHDTGTRKA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella oneidensis (strain MR-1)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.095 kDa
Sequence
MAQFFKAKPNSSKQLSAKQSFSVQQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSTERVSPLCPHYHTCGGCDLQHMSLTAQREHKSAALVDIMAKFAGAEGSLAPALSGEGWHYRRRARLATLFDKNTKQLSLGFRASSSSHVVSITECLVLAKPLSDLIAPFAKLLNQLAAKSSLGHLELIAADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNEGEFHGVNGTLLLPVYQLLDDKTDVQPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLARMGADVIGVEGVPEMVSQARENAVANGLSNLTFYHGDLSADLSSEPWMGKIDKLLLDPARAGAYESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMALFELAK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella sp. (strain ANA-3)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.957 kDa
Sequence
MAQFFKAKPNSSKQLSAKQSFSVHQLDHLGAGIAQHQGKVVFIPGALPNETVQAQLTEQKKNYARAKLIKVETPSAERVTPLCPHYQSCGGCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTKQLSLGFRASSSNQVVPIDSCLVLAKPLADLIAPFAKLLNQLAAKSSLGHVELIDADNGHFAVIRITKPLNDKDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDNADATPVSLTFTPGNFVQVNAQINKTMVAQALEWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMALFELAK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella sp. (strain MR-4)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.857 kDa
Sequence
MAQFFKAKPNSSKQLSAKQSFSVHQLDHLGAGIAQHQGKVVFIPGALPSETVQAQLTEQKKNYARAKLIKVETPSAERVTPLCPHYQSCGGCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTKQLSLGFRASSSNQVVPIDSCLVLAKPLSDLIAPFAKLLNQLAAKSSLGHLELIDADNGHFAVIRITKSLNDKDMAKLAQFAEHHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDKAGATPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPDMVSQARENAAANGLSNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMALFELAK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella sp. (strain MR-7)
Length
449 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.92 kDa
Sequence
MAQFFKAKPNSSKQLSAKQSFSVHQLDHLGAGIAQHQGKVVFIPGALPSETVQAQLTEQKKNYARAKLIKVETPSAERVTPLCPHYQSCGGCDLQHMSLAGQREHKSAALVDIMAKFAGAEGNSVPALTGEGWHYRRRARLATLFDKNTKQLSLGFRASSSNQVVPIDSCLVLAKPLSDLIAPFAKLLNQLAAKSSLGHLELIDADNGHFAVIRITKSLNDKDMAKLAQFAEQHQIHICLQDNNGEFHGVNGTLLLPVYQLLDDKADATPVSLTFTPGNFVQVNAQINKAMVAQALDWLAPQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDLSADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLERGYKLQKLGLIDMFPQTHHIEAMALFELAK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT)
Length
447 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.928 kDa
Sequence
MAQFYSAKSNKTKHLSQKISLTPTALDHQGQAVAEHQGKVVFVPGLLPGESAQVQLVENKARFARAKVLKRTSDHPQRIAPPCPHFARCGGCQLQFAPTGLQRDLKQQALAQVVSKLSGLTPEQWAEPLLGPDWHYRRRARLGCRYDAGELVLGFRQEGSNRLTAIDHCPVLAEPLSELITPLQQLLAPLKLARHVGHLDLMLASEGPVVVVRLLRPLREEEREALAAFGQSRGVQMLIQGDALTDLSGQAVAPLHYDIGEGRPQPAFLPGDFFQVNGVVNQAMISQAIEWLQPQPGEKGLDLFCGGGNFTLALAGQSAEIIGVEGVPAMVERARARAAELGLEQLRFEYADLNGEAPKAQWLKDVDWVLLDPARAGAPGVMEWLAKLRPSRILYVACNPASLGRDGKVLAQQGYRLSRLGLVDMFPHTHHLESMALFEPGNNKHPK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / NCIMB 11848 / C-107)
Length
447 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.575 kDa
Sequence
MAHHPKRKPLSQEPQKASIEALTHEGRGIAHVAGKTVFIDGALPGETVWFHYLRRRGKFDEGRVLEVLQPAPSRVEPRCRHFGVCGGCSLQHLSTAAQLQLKQVTVREQFRHFGGVEPEQWLPPLVGGGYWGYRYKARLGVKFVKKKDRVLVGFREKGSSLIAALEGCEVLHPSVGYLLPALGELIASLSCYDRIPQIEVAAGDQSTGLVFRHLVPLTTADTEQLVAFGQAHKLQIYLQGGGAETVRLLWPAGARLSYSQFGKLEMIFLPTDFTQVNREVNTKMVRRVLELLEIKSGERVLDLFCGIGNFTLPLAIAGAEVVGIEGNAGLVARAVANATHNRLENAYFEMADLNGAEWTHYVWAREGFSKALLDPPRSGALLAVQQMSKLRVQRIVYVSCNPATLARDAGELVNRQGYRLRYAGVIDMFPHTTHVETLALFEQTRKH
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Hahella chejuensis (strain KCTC 2396)
Length
446 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.811 kDa
Sequence
MSRRRKKLPQESITCEIESLSHEGRGVSHKDGKTLFVEGALPGETVTARYVNSRRSYDELAVEEVLTQHPQRIEPDCQFSKLCGGCSMQHVDLGFQINHKESVLLDHLRHFGDLKPEQVVPPLVGAGRGYRTKARLGVRYVAKRDEVLVGFRERYSNFLTAIDECPILIESVGGRIPELKALVRSLSGYQRIPQIEVAAGDDMCALVIRHMDPLTEEDLQKLIAFSEQTGLAIYLQPKGPDTVAKLWPKDGQELLSYQLRDYGLTMQFHPMDFTQVNRDINRRMLAQALEWLQPQAGETILDLFCGLGNFTLPIARSAAHVVGVEGSEDMVRRGYANAELNGISNVEFHAADLHLPLAPAKEAKHAWLRTYDKVLLDPPRSGAEELAKQMTRFGAKRIVYVSCNPATLARDAGILATQGYKLIKAGVMDMFPHTAHVESMALFEKA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875)
Length
445 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.009 kDa
Sequence
MSTPIALVESLDQEGRGVAHVEGKTIFIDGALPGEQVTYKVRRRKERYEVADVLDVLQASHLRTQPGCEHFGVCGGCAIQHLEFSGQVAAKQRMLESNLWHIGKTRSERMLPPIYGPAWGYRHKARLRVRHVAKKGGVLVGFNEKSSSFVADMDSCRVLPPHVSNLIVPMKELVGQLSIRDRLPQIEVAVGELATVLVLRILEPLQPQDAAPIKAFADRYGVEVWTQSKGPDTVQPFYPLQGPGLSYSLPEFNLTYPFKPTEFTQVNPYINRVMLRRAMQLLQPQPGERIADFFCGLGNFTLPIARSGASVFGMEGSAALVARANESAALNSLAGQVEFQEADLFKMTPALLQSLGRFDKWLIDPPRDGAIELVKALPDIEDADADTSHVPQRIVYVSCNPATLARDAGILVHTKGYRLLASGVINMFPHTSHVESIALFEKASP
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2)
Length
445 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.77 kDa
Sequence
MARRRKQLPETPEPASIETLSHDGRGIARRDGKTTFIDNALPGEEVMFKFTYMRRKFDEGKAVEIVTASPDRVTPPCEHSTLCGGCSLQHMSPEVQVSRKQAVLREQLAHFGGLEPEEWLAPLTGPVTGYRSKARMGVKYVEAKGETLVGFREKRNSFIAQLHTCEVLIPDVGHRIDELRTLMHGLESRSRIPQIELAAGDDDVALIIRHLDPLSEADQQALLGFCQNLGWHCYLQPGNESTVHRIWPQEGEQRLYYKHPSAGVELAFHPTDFTQVNAEINRKMVPLALDLLDISPDHTVLDLFCGLGNFTIPAAKRAGKVVGVEVSQAMVERGYENARRNSLENLEFHAWDLSQDVSGQAWARQTYDRILIDPPRTGALEMVKLMPRLGASKIVYVSCNPATLARDAGELMALGYRLKAAGVMDMFPHTTHVESIAVFEKMKKK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella halifaxensis (strain HAW-EB4)
Length
445 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.989 kDa
Sequence
MAQFFKAKPNTSKQLSSKLSLKVTQLDHLGAGIAHHDGKIVFINGALPGETVSVQLTEQKKKFARAKLLKIDKASAQRVSPLCPHFDKCGGCDLQHLDIDAQRKHKASTLVDLVNKFAQTQAGEVCDTLSDNAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLAFMLNQLSGKKALGHVELTQADNGNFVVLRVTKALSDKDKARLVEFANKHQVIVLLQDDDAQCEHLNGAGEQPYYGFDDNQVKLNFSPGNFIQVNAQVNQAMVSQAVEWLSPKADERVLDLFCGIGNFSLPLAKDGAEVIGVEGVQAMVEQARINAKQSGLDKVSFYHADLSADLSKEPWLGKVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGLVDMFPQTHHLESMALFELKN
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
Length
445 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.86 kDa
Sequence
MAQFFKAKPNRSKQLSSKLSLKVTQLDHLGAGIAHHDGKIVFINGALPDETVSVQLTEQKKKFSRGKLLKIEKRSTERVTPPCPHFDKCGGCDLQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSALIPDLAFMLNQLSGKKALGHVELTQADNGNFVVLRVTKVLSDKDKARLVEFANKHEVIVLLQDDDAQCEHLNGAGEQPFYALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKDGAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADLSKEPWLGKVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGLIDMFPQTHHLESMALFELGN
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella piezotolerans (strain WP3 / JCM 13877)
Length
445 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.696 kDa
Sequence
MAQFFKAKPNRSKQLSSKLSLNVTQLDHLGAGIAHHQGKIVFINGALPGETVQVQLTEQKKKFSRAKLLKVETASGERVSPLCIHYEKCGGCDLQHLNVESQRAHKAKALQELVAKFAQTTASQVCETLSDSPWHYRRRARLATWFDKKTKHISLGFRASSSSDVVEIQSCVVLAKPLSALIPELAFLLNQLSGKKALGHVELTLADNGIFVVLRVTKALSDKDRQRLAEFGASHSLNMLLQDDDANTESLSGHGQQPFYSFNDSDAELKFSAGNFIQVNASVNQAMVNQAVDWLAPQANERVLDLFCGIGNFSLPLAKSGAEVIGVEGVPAMVEQATVNAKGAALDKVSFYHADLSADLSQQPWLGKVDKMLIDPARAGAYESMLSLKKLKPQALVYVSCNPASLARDSEVILKQGYRLTKIAMVDMFPQTHHLESMALFELGK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
Length
445 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.664 kDa
Sequence
MGRRRRRLPREPFEIAITGLSHEGRGIAHHDERTLFVHGALPGERVRAVYTKRRRSVAEARVVEVVSPAPERIAPHCPHFGVCGGCSLQHLTPERQVELKQSVLMEQFHHMGGVQPERVLAPLTGAPWGYRRKARLAVKHVPRKGGVLVGFREKHSPFVAEMDRCPVLDPRVGERLTELGRLIEGLSIPDRVPQIEVALGDETGALVFRNLAPLTAADLNRLAGFARDSGLAVYQQPGNEATMALVHDPVGRRLDYALPGHGVRLGFRPGDFTQVNAEINRAMVDQALDLLAVEPGQRVLDLFCGLGNFTLPLARRASEVVGVEGAEALVERGRENALRNGLDNVRFYGADLTLAAADQPWATGGFDRVLLDPPRSGAFEVLGLVAALGPKRIVYVSCGPATLARDAGELVHRHGYRLTAAGVMDMFPHTAHVESMAVFQREAQD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Legionella pneumophila (strain Paris)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.456 kDa
Sequence
MRKVKPKLNLTSQTARIVNLSHDGRGIARVNGKATFIQGALPGEVVEFQYTRVKKDFDEGKLLSIVEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMEDKHCIAQIEVAAGDNEVALIFRNLSPLTEQDELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYELPDYQITFQFHPNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRSLVNTSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIALFQKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Legionella pneumophila (strain Corby)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.497 kDa
Sequence
MRKVKPKLNLTSQTARIVNLSHDGRGIARVNGKATFIQGALPGEVVEFQYTRIKKDFDEGKLLSIVEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSVLSPLTSHHWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMEDKHCIAQIEVAAGDNEVALIFRNLSPLTEQDELKIREFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYELPDYQITFQFHPNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIALFQKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.566 kDa
Sequence
MRKVKPKLNLTSQTARIVNLSHDGRGIARVNGKATFIQGALPGEMVEFQYTRVKKDFDEGKLLSIIEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTEPQSMLSPLTSHHWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMEDKQCIAQIEVAAGDNEVALIFRNLTPLTEQDELKIRKFAEQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYELPDYQITFQFHPNDFTQVNAELNRKMVTQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNKNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIALFQKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xanthomonas axonopodis pv. citri (strain 306)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.346 kDa
Sequence
MARTRNRLDRTPFQTAVTDLSHDGRGVARRDGEGGKVTFISGALPGELVRAEPTARSRHFDEAKTVGVLEASPQRVTPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALIEGMDGKRDIPQIEFIAGDDAVALTIRHMQPLSERDRQAWITFAQEHGFAIFLQPGGVDSVQPLWPQEVPLSFRLPQWDVELAFRPLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKENAQRNGLDNAQFYAADLTQDQRSAPWMRQGFDKLLLDPPRSGALEVLQQLPLKTFQRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFERR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.394 kDa
Sequence
MARTRNRLDRTPFQTAVTDLSHDGRGVARRDGEGGKVTFISGALPGELVRAEPTARSRHFDEAKTVEVLEASPQRVTPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALTGDNWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSICYTVIPQIGEKIPLFAALIEGMDGKRDIPQIEFIAGDDAVALTIRHMQPLSERDRQAWVAFAQEHGFAIFLQPGGVDSVHPLWPQDVPLSFRLPQWEVELAFRPLDFIQVNASLNQKMIAHAVALLEAKPDDRVLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKENAQRNGLDNAQFHAADLTQDQRSAPWMRQGFDKLLLDPPRSGALEVLQQLPLKTFDRIVYVSCHPGSLARDAGYLVNDQGFTLVCAGAMDMFPHTAHVESIAVFERR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xanthomonas campestris pv. campestris (strain 8004)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.272 kDa
Sequence
MARSRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHTAHVESIAVFEKR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.272 kDa
Sequence
MARSRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGEVVVAEPTARSRHFDEAKTVEVLQASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKKDKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPKWDVELAFRPLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPHTAHVESIAVFEKR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.258 kDa
Sequence
MARTRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGELVRAEPTARSRHFDEAKTVEVLEASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPGLTGDNWGYRRKGRFSVRRVEKKAKTLVGFRELDPRFVADLSVCYTVIPQIGEKIPLLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHMQPLSARDQQAWIAFAQEHGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWDVDLAFRPLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKDNAQRNGLDNAQFYAADLTQDQRNAAWMRQGFDKLLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFERR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.244 kDa
Sequence
MARTRNRFDRTPFQTAITDLSHDGRGVARRDGEGGKVTFISGALPGELVRAEPTARSRHFDEAKTVEVLEASPQRVAPRCPHFGVCAGCVLQHLEESQQIVAKQRVLMDNLERIGHVTPQAVLPALSGDNWGYRRKGRFSVRRVEKKAKTLVGFRELDPRFVADLSVCYTVIPQIGENIPLLAALVEGMDGKRDIPQIEFIAGDDAVALTIRHMQPLSARDQQAWIAFAQEHGFAIFLQPGGVDSVHPLWPQEVPLSFRLPQWDVDLAFRPLDFIQVNASLNQKMIVHALALLDAKPDDRVLDLFCGLGNFTLPLARVVREVVGVEGDAGLVARAKDNAQRNGLDNAQFYAADLTQDQRNAAWMRQGFDKLLLDPPRSGALEVLQQLPLKTFERIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFERR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Legionella pneumophila (strain Lens)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.446 kDa
Sequence
MRKVKPKLNLTSQTARIVNLSHDGRGIARINGKATFIQGALPGEVVEFQYTRVKKDFDEGKLLSIVEPSTLRVEPKCPHYQMCGGCSLQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKKQSTMVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLIDTMEDKQCIAQIEVAAGDNEVALIFRNLTPLTEQDESKIRKFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYELPDYQITFQFHPNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNTSFSKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVESIALFQKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Stenotrophomonas maltophilia (strain R551-3)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.223 kDa
Sequence
MARSRSRIDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGALPGEVVMAEQTARSRHFDEARTVEVLKASPQRVTPKCPHFGTCAGCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPGTVLAPLVGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTKVEALSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLSDADRAAWATFGQQHGFVIYLQSGGVDTVQPLDGQGVPLSFRLAPWDVELAFRPLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAERNGLANAQFFSADLTQDQRSTAWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFEKR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Stenotrophomonas maltophilia (strain K279a)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.216 kDa
Sequence
MARSRSRIDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGALPGEVVMAEQTARSRHFDEARTVEVLQASPQRVTPKCPHFGTCAGCVLQHLDEDQQIVAKQRVLMDNLERIGHVKPGKVLAPLVGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTKVEALSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLSDADRAAWAAFGQQHGFVIYLQSGGVDTVQPLDGQGVPLSFRLAPWDVELAFRPLDFIQVNAKLNEKMIAHALDLLEPGEDERVLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAVRNGLANAQFFSADLTQDQRSTPWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFEKR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Psychromonas ingrahamii (strain 37)
Length
444 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.785 kDa
Sequence
MAQFFKAAPTNSIKNHILKNIKVEKLDHRGRGLAYFQNKPLFIDGALAGELLEVQIVESKKRYSKGKIKKIIKASELRITAACPHYQECGGCDLQHLNQAAQIQIKSDGLLSLFQRFAKKVPQQLEKPIIDKAWEYRRTARFGLQFDKKNKQLKMGLRRAQSNELIDQKVCPVLLPELECLIPPLKILLNSLQCKAHLGHVELLYADQGAVVLLRHMKTLTSPDLQLITAFSALQKVNFFGQASSNQSVCLAGEANLSYRLPEWDCSLSFTPTDFLQVNSDINKKMVSQAMQWLALEKNDSVLDLFCGLGNFTLPIARQVESVVGIEGVQQMVDRATANAQLNNLQNARFYQADLSGENLIEQEWANQNFNKVLLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQTAHMESMALFTG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xylella fastidiosa (strain 9a5c)
Length
443 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.322 kDa
Sequence
MARQNRFDRTSFQTQIIDLSHDGRGVARPHGEGDKVTFVTGALPGEVVIVEPVARNRHFDEARVVEVLQASPQRVIPRCSHFGVCSGCVLQHLAEDAQVVSKQRVLLESLERIGRVSPERVLPALAAESWGYRRKGRFSVRWVEKKGRTLVGFREHDPRFVADVSVCHTVVPQVGEKIALLATLLNSLDGRRDVPQIEFIAGDAVVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKPWDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVDEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDAPWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHTAHVESIAVFDRC
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Length
443 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.101 kDa
Sequence
MARQNRFDRTSFQTQIIDLSHDGRGVARPHGEGGKVTFVTGALPGEVVIVEPVARNRHFDEARVVEVLQASPQRVIPRCSHFGVCSGCVLQHLAEDAQVVSKQRVLLESLERIGCVSPERVLPALAAESWGYRRKGRFSVRWVEKKGRTLVGFREHDPRFVADVSVCHTVVPQVGEKIALLATLLDSLDGRCDVPQIEFIAGDAVVALTVRHLQPLSEADRLALIEFGKEHGIAIFLQSGGVESVRLLWPDEVLLAFRLKPWDVEFVFRPLDFIQINGGLNEKMIAHALDLLGAGFGERVLDLFCGLGNFTLPLARTVGEVVGVEGDIGLVERARENARRNGLGNAEFFVADLTRDQRDAPWMRQGFDKLLLDPPRSGAIEVLKQLPLKMFERIVYVSCHPGSLARDADFLVNEQGFVLRAVGAMDMFPHTAHVESIAVFDRC
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Length
443 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.429 kDa
Sequence
MAQFYSPNRRVTTKQTLTVTVNSLDPFGQGVAHHQGKAIFIPGALPGEQAEIELTEQKRQYSRGKLKRLLNRCNERVVPACPHFGICGGCQQQHANSQLQQMSKADSLQRLIMREAGACPQLDPVICGSEYGYRRRARLGLLYQPKQHRLQMGFRQTESHDLVCIKHCPVLRPELERLLLPLYQCLSGLQAVRRLGHVELVLADNGPLMVLRHLDTLKEVDRAALIDFAKREQVAVYLAGDSDNVEKLIGEEPYYQIEGLRLAFHPRDFIQVNDTVNQQMVAQAIAWLDVQPDERVLDLFCGMGNFTLPLAKLAREVVGVEGVAALVANGQYNALNNALPNVSFFHENLESDISRQPWATQGFDKVLLDPARAGAAGVMSHIVKLAPKRVVYVSCNPTTLARDSQVLLAAGYRLAQVRMLDMFPHTGHLESMALFMQEPGVAK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Length
443 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.978 kDa
Sequence
MGHRGKRKPLPAEPIAAHIESFAHDGKGIAHVDGRVVFVDGALPGEDVTFVYTEIKRDYAAGRVVEIVTASPDRVPARCRHFALCGGCSLQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSRARLGARYVAKKGRELVGFREHASAKIVDMTDCPVLHPALGERIQAFAELIEGLSLRERLPQIEAAVGEERTALVFRVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSVAPVYPETAHDLSYSLPEWEVTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEFHVADLSKPESCGSWAGREYHKVLLDPSRSGALEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYRLLKAGVMDMFPHTAHVESIAVFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella woodyi (strain ATCC 51908 / MS32)
Length
443 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.296 kDa
Sequence
MAQFFKAKPNSSKQLSAKVSLQVTRLDHLGAGIAQHNGKVVFIPGVLPGEKAMVQLTEQKKRYSRAKLLNLETHSIDRVEPKCAHYHQCGGCDLQHLSLEKQRLHKESALVSLMAKLSHTEAEALVPAIIGEQWHYRRRARLATFYHQETKRTTLGFRAQSSKEVIDISSCPVLAKSLSELISPLSKLLNQLASRRALGHVELIDVDNGQFVVVRATKELSDKDKEKLLSFAQEHKVNLIVQGNEGELLVIKGPKELPFYTLNSDIKLSFTPGNFVQVNGEINRAMVDQAVQWLDVKADERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVAQARINAKQSDLSDVTFFHTDLSADLSKEPWLGKVDKLLLDPARAGAFESLQWLKKMKPKSIVYVSCDPSSLARDSEPLLKHGYKLKKLGLVDMFPQTHHIEAMALFELS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Length
443 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.498 kDa
Sequence
MAQFFKAKPNQAKKLSQKIALKVQRLDHLGAGIAEHQGKVVFIPGALPGETVEVQLTEQKKNYARAKLQRVSEASPDRQTPPCPWYGKCGGCDLQHLSLPRQLEYKRQALGDIVSRSAAQTVTVNTDEVSGDSWHYRRRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSELISPFATLLNRLKGKQRLGHLELTQAANGLFAVLRVTAPLAQSDKKLLSAFADERQIALLLQGNEGELEFLSSGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGERVLDLFCGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSEDLAAEPWLGKIDKLLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTRLGLVDMFPQTHHSEGMALFELVN
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Length
442 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.514 kDa
Sequence
MAIFYSEKTAKQTAKNCCKTTARQIVNIHSLDYQGLDVAKINGKTWFIENALPNEQVLIHVIEEKRQYGRAKANKILQASPLRQQPSCISYPQCGGCQMQHIKLDVQRQTKQQAFFKQLQRLQTEPIDWQPMISGQDKHYRRRTKLSMAIQRNQLVIGFRQQNTHQIIPLTDCEVLEQPLSTLLPKLQHLFAGWKMKKALGHIELVNADNTRAMLVLHIGKINAQDQHMLLNFAKAEQLSLYLMCDENHIEHLCGEAPYYQINGLTLHFCIRDFIQVNQPLNQKMVNKALEWLAITAEDRILDLFCGIGNFSLPIAQQAGFVVGVEGVEEMVKQAKINQQTSGLNNIAFYQTNLAESFVDQHWATQPFNKVLLDPARQGALFCLDHLMALTPERIIYISCNPATLMRDAEKLIRHGYKIAKSAVIDMFPHTGHLESISMFIK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio tasmaniensis (strain LGP32)
Length
442 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.225 kDa
Sequence
MARFFQPKKKTQLETKHQSVLVERMDHNGAGIAYQKNKPVFIDGALPGEKVVIQLTESKSKFSRAKLIKLLQPSELRLKPFCKHFNQCGGCHLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRARISLFVDKKTQLLQFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSLTSLGHVELVLGDTGPVMVLRHLKPLVEKDEQALMTLMTLAKEEGATLYSMPETDKLVRLVGDAPSYSETGVTLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVVGVEGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKEKFDKVLLDPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHTSHLESMALFIKA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shewanella sediminis (strain HAW-EB3)
Length
442 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.872 kDa
Sequence
MAQFFKAKPNSSKQLSAKVTLEVTKLDHLGAGMAQHQGKIVFIPGALPNEKVTVQLTEQKKRHARAKLLKIESDSNDRVEPKCPHYQQCGGCDLQHLSIDKQRSYKQSALVDLMAKLSHTEAESLAPALIGQEWDYRRRARLATHYNKESKQITLGFRASASKQVINIDVCPVLAKPLSDLIAPLSLLLNQLSGKKALGHLELIDADNGYFAVLRMTKALSDKDAKKLTAFANEKSISLIVQGNEGEFTILGDRNELPYYALDDVKLNFTPGNFIQVNAAINESMVKQAVDWLSVKPNERVLDLFCGVGNFSLPLAKSGAEVIGVEGVPEMVKQARENAADSGLDNVSFFHTDLSADLSKETWLGKVDKLLLDPARAGAFESLQWLKKMKPKAIVYVSCDPSSLARDSEPLLKHGYKLKKLGLIDMFPQTHHIEAMALFELD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
Length
441 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.731 kDa
Sequence
MSIDSLDMEARGVGRLLNEDGTPGKVIFVEGALPGETVSYRSFRRKPSYEQAHLVEVRQESVMRVKPGCQHFGVCGGCSMQHLDSRAQLAIKQRVLEDNLWHLSKVKPDVVFRPIAGPDWGYRYRARLTVRHVAKKGGVLVGFHERKSSYVADMTRCEILPPHVSAMLVPLRELVGGLSIRDRMPQIELAVGQEVTALVLRILEPLTDADKDLLRAFADQHKVQFWLQPKGPDTVYPFYPADAELAYTLPEFGIRMPFKPTDFTQVNHQINRVLIGRALRLLDAQPQDRLLDLFCGIGNFTLPLATQGKSVMGIEGSEALTTRALANAEYNGLAARTEFACRNLFEVTAEDIAALGRFDRWLVDPPREGALAVCKALGELAQQGSNVLPQRIVYVSCSPATLARDAGLLVHGAGYRLAGAGVVNMFPHTSHVESIAVFERG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Proteus mirabilis (strain HI4320)
Length
441 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.308 kDa
Sequence
MVQFYSPKKRPAKKQVKNLAVTANALDANGQGIAHAEGKTIFVKGLLPQETARIRLTEEKRQFAKGEVITRLTTNPERVTPPCQYYQHCGGCQQQHVPIDWQRTTKAEVLSHLIKRETNVVISAQPVIAGAEYGYRRRARLGLRYHPKKGLVMGFRQALSNDLVMVTQCPVLKPQLNVLLLPLWQCLKQLSVVRDLGHVELVLADNGPLVILRHLSPLSEGDKQLLDDFSHHAQVMIYLAGDNGEIAQLTTIEKEPFYQIEGLKLHFAPTDFIQVNDEINHKMVAQAIAWLDLSPNDRVLDLFCGMGNFTLPMAKRVDKVVGVEGVPALVAMAKKNAELNQLDNVQFWHADLSADFSAMPWAQEGFNKVLLDPARAGAAQVMSHIVTLSAEKIVYVSCNPTTLARDSKILLDSGYQLTQLRMLDMFPQTGHLESMALFIRK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pseudoalteromonas haloplanktis (strain TAC 125)
Length
441 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.316 kDa
Sequence
MAQIFKATKKPLKQQSLVLDITAMDHHGRGIAKHNNKVCFVSNALPNEQVKATIIADKARYSEAQTHKVLQASEYRVAPFCEHYNQCGGCQLQHLDSSQQVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSARLAVMFDKKAKKMHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLINQHKALHSVSHLQLCQGDEQNFVIIRHTKPISEDIKALVAQSAAEQQWQLVWQSESEVIEHSHLAMPFYALEELGLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDENVLDLFCGIGNFSLVLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQFNCFDLTNKIETASWFNKNLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLMNMFPHTGHIETMALFQRR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Mannheimia succiniciproducens (strain MBEL55E)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.336 kDa
Sequence
MVLLYTPPQKINKLQREMEVEILDLDYQGLGVAKIQGKTWFVENALPGEKVRIKIKEEKRQFGLATTKKILEASAQRQTPKCQYASRCGGCQNQHIPVEMQREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRRVRLSMLFDGKLKRLEIGFRQKNSAQIVHIEQCEVIEPALNKILSKLTALLSRFSQPKNLGHIELVAADNGVAMLLRYSGKLTENDRTLLLDFAVREELMLFLQDDEKTEQIYGQPPFYQLADNLQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDHVLDLFCGMGNFTLPLSRRVKSAVGIEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNKILLDPPRTGAAFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHTGHLESITLFEKQS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Marinomonas sp. (strain MWYL1)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.183 kDa
Sequence
MRRRTSPRRTTTSKPQPIGPIQTFEVDGLTHEAKGVARLQGKVTFIEGALPGETVEAQVNKAGRRFDEAVLVNIIEPSVYRVEPSCQHFNLCGGCSFQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAIDIKKGRMVLGFRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLENDLAGVLGHVELLEDTKGVSALFRLTSPISDELKNAWEDWAEKGRVALYWQAPKVGKAEVALEKMRYYDLGDLRLKYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQAVIGVEVQETMVEAARENARVNGFDNLSFVAADLTKPVNNELFKQTITKVLLDPPRAGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVETMMLLQKKK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Tolumonas auensis (strain DSM 9187 / TA4)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.224 kDa
Sequence
MVQFFQPKPKALPTQAVEITIDNLDHHLTGVGRYQGKACFVEGVLPGEKVSVQITEQKKQYAHARLRQVIEPSADRCEPFCPAFKQCGGCNAQMMPQAMQCQAKQQGVQRLFRQLAKIDLPAPLWIESSAPQAYRRVCRLAVKYDKNKRCVLVGFRQKQSQALVEINSCPVLTAALSALIVPLRTLINELSSARDVGHIELYETESGLAMLLRHNGRPPVKDKELLLAFALQHDCALYLQTTGYPEPLADVKPSFYQLDGLRLYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDLFCGIGNFTLPLAREAASVTGIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANAGWQQQCYDLVLLDPGRTGAEAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTGHVESLFLFERK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.939 kDa
Sequence
MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTDCPVLEPSLNALLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVAQALNWLEVSPQEHVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.008 kDa
Sequence
MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio cholerae serotype O1 (strain M66-2)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.008 kDa
Sequence
MARFFQPKKHSTLDTKHQPVTIERLDHQGSGLAFLHKKPLFVDGALPGEEVLIQLTENKSKYARGQLIKVLKPSAERVAPFCAHYAQCGGCDLQHLDRAGQIHHKQQALSQLMVKFAGQSLALSAPVCSDDQGYRRRARLSLMWDKKTQQLQLGFRRKQSKAIVNVTHCPVLEPSLNALLPDLNALLSEWSQPERLGHVELVKGDNTRVLVLRHLGALIEQDQQRLTDFASQNQLTLYLMLEAGELQHVQGEAPYCEETGSRLSFLPSHFIQVNRAVNQHMVVQALNWLEVSPQERVLDLFCGLGNFTLPLAKQAQAVVGVEGVDEMVQHATHNAKLNQINNVAFYQANLEQDMTSASWAQQKFAKVLLDPARAGAEGIVDQLSALGAKRVVYVSCNPATLARDSQSLLSQGFRLEKLGMLDMFPHTSHLESMALFVKKG
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP 104768 / NCIMB 8455)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.035 kDa
Sequence
MSRPKPIHNAQPEQVFIESLDTEGRGIARVEGKVLFVDGALPGERVWARRTQNHKSFDRAELLQVDKASSLRVSPPCPHFGVCGGCSLQHLEPAAQVAIKQRQLEDHLWRIGKVRPERVLPPIHGPSLGYRSKARLSVRTPKTRGAMVGFRERNSSYVVDMGQCLTLDPRVGQRILSLRTLIGQMQSPQDFPQIEVAATPDAVALVFRHMRPLAESDLQHLRAFGEQHDLQIWLQPRGPETLYPLWPEQPEPLHYDLPDYRLRLRFDPLVFTQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGAIEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERGYRLRAAGVVNMFPHTAHVESIALFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Acidithiobacillus ferrooxidans (strain ATCC 53993)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.035 kDa
Sequence
MSRPKPIHNAQPEQVFIESLDTEGRGIARVEGKVLFVDGALPGERVWARRTQNHKSFDRAELLQVDKASSLRVSPPCPHFGVCGGCSLQHLEPAAQVAIKQRQLEDHLWRIGKVRPERVLPPIHGPSLGYRSKARLSVRTPKTRGAMVGFRERNSSYVVDMGQCLTLDPRVGQRILSLRTLIGQMQSPQDFPQIEVAATPDAVALVFRHMRPLAESDLQHLRAFGEQHDLQIWLQPRGPETLYPLWPEQPEPLHYDLPDYRLRLRFDPLVFTQVNQAANQVMVRRAMALLQPQPGEHILDLFCGLGNFTLPIARLGAQVLGIEGDARLVALAAENAAANGLADKARYAVADLTQARMEDFAPAGAIDKMLIDPPRSGAIEVLRSLTPGVRRLVYVSCNPATLARDAEYLVHERGYRLRAAGVVNMFPHTAHVESIALFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)
Length
440 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.804 kDa
Sequence
MAQFFKPQKKSTQPQRIEFTVDSLDHHCVGIGRHQGKAIFIEGALPGELVKARILEDKKQYAHAALQQVVTPAANRIAPFCSHYRECGGCSAQHLAEADQRAAKEAGLVSLFERLGNIQPPALEPVLGGESRAYRRVCRLAIKFDKNGRCTRVGFRRRQSNDLVEIGGCPVLAEPLSVLITPLRECLNRLKSQRELGHVELIQAEQGILMLLRHTGRPTEADRAQLIEFAKTQGIDLYLQAADEQIEPLHQQFAPSYSLDGLSLAFAPGDFIQVNAPVNQRMVEQALSWLEAGKDDKVLDLFCGIGNFTLPLARQAREVVGVEGELAMVARAEENARRNGINNARFYKADLGGDIAGMSWAREGFDLVLLDPARPGAFEVMEHVVKLSPRRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMALFERK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Haemophilus somnus (strain 129Pt)
Length
439 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.884 kDa
Sequence
MVLLYQPKKQKKLRAAFTTIVQDLDYQGLGVAKIQGKTWFIENALPQEQVQVQVIEEKRQYGLGRVQKILQASPLRQTPRCAYYQICGGCQSQHIPIHLQRETKQKALFQRLTKLQKEAIEFMPMISGEAWHYRRRVRLSLYWDAKSKNLKIGFRQKNSQQIVNIRQCDVLDPLLNELLPKLHELLSTWSKPKTLGHIELVAADNGVAMLLRVTEKLAEHDRTLLLDFAFNHQVMLFVQDEKEICHLQGDLPYYQLDDGSILHFDIRDFIQVNRQLNQNMVNTALDWLDLKKKDNVLDLFCGMGNFTLPISRYVKSAVGIEGVLPMVEKARRNGERNHCHNVQFYQCDLSQSFTEQEWAKVPFDKILLDPPRSGAAFALNALCYLMAEKIVYVSCNPATLVRDVELLLKFGYQLKKVAMIDMFPHTSHLESISLFERNR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849 / C 71)
Length
439 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.959 kDa
Sequence
MTAPVLIESLDQEGRGVAHAEGKVIFIEGALPGEVVTYNAYRRKPSFELAQVGQILKPAFSRVTPECHHFGICGGCSMQHMDVRTQVAAKQRVLEDNLKHIGKVAPELVLPAVYGSPWGYRYRARLSVRYVAKKGGVLVGFHEKRSSFIADMQACRIMPPRISALIMPLRKLVESLSIRERLPQIEVSLGEDVDVLVLRILEPLTAQDETLLKAFADQHHVQLFLQTGGPQTAYPFYPEDAPELSYTLPEFDVTIPFHPTEFTQVNPMVNRILVRRALNLLDPRRGERIADLFCGLGNFTLPVARRGAQVVGYEGSAALVSRARQNSQRNGLAGSTRFMEANLFEIDESWMREQGDFDKMLIDPPREGAVAVVTALEEKQLKPWRIVYVSCNPATLARDASVLVHRNGYALKAAGVINMFPHTAHVESIALFEKARRQA
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA)
Length
439 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.838 kDa
Sequence
MRRRRKLEHKTYKLNIESFSHEGRGIAHFEDKIIFVSDALPGELVIANRTFSCAKFEEADAKEILKPADNRMKPKCDVFGICGGCSFQNLSSEDQIQIKSRWLKKVFARQAKVEPETWLKSLQFQSWGYRRKARLGIRYVAKKDKVLIGFRERKSSFITNMSRCEVLHPSIGEHLEVLANCIERLSIKSSIPQFEVVISESGIALILRHLESLSVKDEKILADCAQELNITFYTQSGGLDSVKPLDEPTILTYSHSNYNIIMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAKYVVGIEGDLGLVERAKYNAEKNSINNVDFYRSDLCKEVVGFEWFKGKTYNKALIDPSRSGAIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDMFPQTSHVESIALFVKR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio campbellii (strain ATCC BAA-1116 / BB120)
Length
439 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.325 kDa
Sequence
MARIFQPKKKTQLNTRHQAVQVERLDHHGAGIAYLKKKPLFIDGALPGEEVVTQLVEEKSKFARGKLIKILKPSEARVEPFCSHYHECGGCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIELGAPVLGESLGYRRRARVSLFVDKKTRQLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSTLKAFKKPEQLGHVELVLGDNAPCITLRHLNKLTEKETNTLVELAKRHQASLYLMPETDQLDLVEGEVPFYQEAGVTVPFTPNNFIQVNQAVNQKMVAQAVDWLDPKSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKAVNNASLNQINNARFYHANLEQDFEGQVWAAEQFDKVLLDPARAGASGIIDQVSVLGARRIVYVSCNPATLARDSQSLLEQGYQLTKLGMLDMFPHTSHLESMALFEKS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Length
439 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.065 kDa
Sequence
MARIFQPKKKTQLNTRHQAVQVERLDHHGAGIAYLKKKPLFIDGALPGEEVVTQLVEEKSKFARGKLIKILKPSDARVEPFCPHYHECGGCDLQHLNYDQQLTHKQQTLRQLMRKFAGSDIDLDAPVLGESLGYRRRARVSLFVDKKTRQLHFGFRKKQSKQIAQVTDCPVLAPELNVLLPEIYSVLKAFKKPDQLGHVELVLGDNGPCITLRHLSNLADDEVSALVELATRHQASLYLMPETDQLNLVAGEVPFYQEAGVKIPFDPNNFIQVNQAVNQKMVEQAIKWLDPQSDERVLDLFCGLGNFSLPIAKRAKHVVGVEGVAEMVEKASNNASLNQINNAQFYHANLEQDFDGQAWAAEKFDKVLLDPARAGASGIIDQVSALGAQRVVYVSCNPATLARDSQSLLDQGYQLTKLGMLDMFPHTSHLESMALFEKS
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Aeromonas salmonicida (strain A449)
Length
439 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.419 kDa
Sequence
MAQFFKPQKKSTQPQRIEFTVDSLDHHCVGIGRHQGKAIFIEGALPGEQVKARILDDKKQYAHAALQQVVTPAANRIAPFCNHYRECGGCNAQHLGEADQQAAKEAGLVSLFERLGQIKAPVLEPVLTGESRAYRRVCRLAIKFDKNGRCTRVGFRRRQSNDLVEIEGCPVLAEPLSALIAPLRECLNRLKSQRELGHAELIQAEQGIMMLLRHTGRPNEADRALLVAFAKSQGIDLYLQAADERIEPLHQVFQPSYSLDGLSLAFAPGDFIQVNGPINQSMVAQALAWLGASKDDKVLDLFCGIGNFTLPLARQAREVVGVEGDLAMVARAEENARRNGIDNARFYKADLSGDIVGMSWAREGFDLVLLDPARPGALEVMGHVVKLSPKRVVYVSCNPVTLARDSQVLVKGGYRLVRLGMLDMFPHTGHLESMALFEQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Haemophilus influenzae (strain 86-028NP)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.864 kDa
Sequence
MVLLYTPKQKTNNVQTITADILDLDYQGLGVAKINGKTWFIENALPHEKVECRILEDKRQYGHATAKKWRVKSSERLEPKCAHFMRCGGCQGQHIPIEMQRKAKQSALFKRLSKLQSEPISFQPMICGDAWAYRRRVRLSLWFNPNTKQIDMGFRQKNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSTPKQLGHIELVAADNGVAMLLRYTKNLAEIDRTLLLKFAEQEKLMLFLQSDKGIEQIYGDAPYYQFSDGIKLHFDIRDFIQVNSALNERMINTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAARNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFALNALCELKAEKILYVSCNPATLVRDAEILCDFGYKIEKSAVIDMFPHTGHLESITLFTTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.87 kDa
Sequence
MVLLYTPKQKTKNVQTITADILDLDYQGLGVAKINGKTWFIENALPHEKVECRILEDKRQYGHAIVKKWRVKSPERLEPKCAHFMRCGGCQGQHIPIEMQRKAKESALFKRLSKLQSEPISFQPMICGDAWAYRRRVRLSLWFNPSTKQIEMGFRQKNTNDLIPVQSCEVAEPAINYLLPKLTALLEKFSAPKQLGHIELVAADNGVAMLLRYTKNLAEIDRTLLLKFAEQEKLMLFLQSDKGIEQIYGDAPYYQFSDGIKLHFDIRDFIQVNSALNEPMVNTALDWLELSQQDCVLDLFCGMGNFTLPLAKRVKSAVGIEGVFEMVQKAAQNAERNQIKNIEFFQADLDQSFVEQPWANQSFNKILLDPPRSGAAFALNALCELKAEKILYVSCNPATLVRDAEILCNFGYKIEKSAVIDMFPHTGHLESITLFTTK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Edwardsiella ictaluri (strain 93-146)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.965 kDa
Sequence
MAQFYTPGRRTATRKILIVTATDLDAFGQGVAREQGKTLFISGLLPGEQAEVILSEEKRHFARGRVTRLISHSPQRVAPRCPHAGVCGGCQQQHAAIALQQQSKSQALQRLMARETGVDIAPQVIAGEPYGYRRRARFGLQFNVKTQRVVLGFRQAASNDLVALKACPVLAPALEALLLPLGECLSALRARRRLGHLELVLADNGPLMVLRHLDPLSLSDREALSAFARQRGLTLYLSDGGAPQRLLGEAPYYQIDGSRLDFNPQDFIQVNAAVNAQMVGQALAWLDVRADERVLDLFCGMGNFTLPLARLALRVVGVEGVPGLVATAQNNARNNGLSNVEFFHQNLEEDVTRQAWASQGFDKILLDPARAGAPGVMQHIVRLAPRRVVYVSCNPTTLARDSQTLLQGGYRLTRLCMLDMFPHTGHLESMALFESAAQ
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.815 kDa
Sequence
MAQFYSAKRRVTTRQTITVKVHDLDSFGQGVAHHNGKALFVQGALPDEVAEVSIIEDKRHFSRGVATRIVTASPQRVEPRCPHYSRCGGCQQQHASPTLQQESKAKALSRLLSKPRGETVEVDDIIASRPWGYRRRARLGLSFQPKSQTLHMGFREKSSSELVNISQCPILKPELNALLQPLHAVLSSLQAVRRLGHVELVQADSGSLLVLRHLDALTAEDRQKLERFSHQYRLSLFLAAESDTLEQVSGGMPHYQSHDLTLTFSPRDFIQVNDDVNQQMVARALAWLDLQPEDRVLDLFCGMGNFTLPMGKFAKNVVGVEGVAALVAKAGYNAELNCLNNVAFWQHNLEEDVSRQPWAVEGFNKVLLDPARAGAAGVMAHIIKIAPQRVVYVSCNPTTLARDSEILLTSGYQLERVTMLDMFPHTGHLESMVLFSRK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.71 kDa
Sequence
MRRRTATRRPAKKAPLGPMQTYLVEGLTHEAKGVARLNGKVTFIEGALPGETVTAQVNKPGRRFDEAVLNAVIETSVDRVSPACQHFGDCGGCSFQHLEESAQRLAKADWLAGQLRNLLSKEQIECLFDVGSGYRRRARIAIDHKKNALVLGFRSKASNRVVDVEQCHVLTPSLQTLFVSLKVCLKQHPILSSLGHIELLEDTKGLSVVLRLVSNITPVQQQAYLDWAQQQDVELYWQAPKASRADLTDEQMRYYDVSNLRLKYHPQDFIQINEFMNQKMVAQAMAWLAPQKDDTVLDLFCGVGNFSLPLAQLAGSVIGVELQESMVQAGRHNASLNGLKNLSFVAADLTQPVAGQFSAENINKILLDPPRAGAFEFLDTIIHIAPQQILYVSCNASTLARDAEYLVLNGYKVVRAGLMDMFPQTSHVETMMLLQKQK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.08 kDa
Sequence
MVQFYSPNRRTVNRHIITVTADNLDAQGQGVARHQGKTIFVAGLLPGEQAQVQLTEEKRQFAKAKLVKRLSDSPYRVNPRCPHFGVCGGCQQQHVAPDLQRESKASVLEHLIRRETGVTVSAKPVILGPEYGYRRRARLGLHYQIKQRQLVIGFRQNQSNELVAIKECPVLRPELEQLLQPLSQCLNSLKAVKRLGHVELVLADNGPLMILRHLDPLKREDKEKLGTFSVQHNVAVYLAADETSLESLNELPEPWYQVDGLKLVFSPRDFIQVNDQVNQQMVAQAIEWLDLQPNDNVLDLFCGMGNFTLPIGRIVQSVVGVEGVATLVANGQYNAKINNLDNISFCHENLEADIHHQPWAKLGFNKVLLDPARAGAVGVMSHIVELVPEKVVYVSCNPTTLARDSKILLEAGYQIISVRMLDMFPHTGHLESMALFSR
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio vulnificus (strain CMCP6)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.221 kDa
Sequence
MARFFQPKKKLQPESKHQQVLVEKLDHQGAGIAYLNKKPLFIDGTLPGEEVVTQLTESKSKFARGKLIKLLKPAAERVEPFCSHFNQCGGCDMQHMDYQAQLAYKQRTLLQLMKKFSGSEILLSPPVTGLEKAYRRRARVSLMWDKKSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFQHPEHLGHVELVAADNGAVITLRHTGPLLDEDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAKSVTGVEGVDEMVQKAAINASLNQINNAQFFHANLEQDFVGQPWASEKFDKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMFPYTSHLESMALFEK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Vibrio vulnificus (strain YJ016)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.216 kDa
Sequence
MARFFQPKKKLQPESKHQQVLVEKLDHQGAGIAYLNKKPLFIDGTLPGEEVVTQLTESKSKFARGKLIKLLKPAAERVEPFCSHFNQCGGCDMQHMDYQAQLAYKQRTLLQLMKKFSGSEILLSPPVTGLEKAYRRRARVSLMWDKKSRQLQFGFRRKQSKQIENVTQCPVLVAELECLLPELKAILSHFHHPEHLGHVELVAADNGAVITLRHTGPLLDEDVAKLRQCAEQHQATLYLMPASDQLERISGEAPYYQEIGFKVPFEPNNFIQVNQKVNQQMVVQALEWLDPQSSDRVLDLFCGLGNFSLPIASKAKSVTGVEGVDDMVQKAALNASLNQINNAQFFHANLEQDFVGQPWASEKFDKILLDPARAGASGIIEQVSALGAKRVVYVSCNPATLARDSQSLLEQGYRLTKLGMLDMFPYTSHLESMALFEK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Aliivibrio fischeri (strain ATCC 700601 / ES114)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.796 kDa
Sequence
MAQFFKPKKKASVNTKHQSVDVVRLDHNGAGIAFVDKKPVFIEGALPGEKAIIQFIEQKKQFSRAKLIKLAQKSEKRQTPICQHYHECGGCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMLNKQTNQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKHLGHVELVQADNGSVLLIRHVADFNEKDQQALVNYCEERNLILYLMPEADVLNHVRGEEPFYLIDGTKIYFTPKDFIQVNRNVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDEMVQRAKLNAERNQLSNVSFYQANLEEEVSEQVWASTKFTKILLDPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Aliivibrio fischeri (strain MJ11)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.733 kDa
Sequence
MAQFFKPKKKASVNTKHLSVDVVRLDHNGAGIAFVDKKPVFIEGALPGEKAIIQFIEQKKQFSRAKLIKLAQKSEKRQTPICQHYHECGGCNLQHLQHEEQIVAKNEKLQELMKKQGVSQGEMVQPIMGEELSYRRRARISLMINKQTNQLDFGFRKKQSKAIVNVRHCPVLVQELDQHLESLFTLLNQLKGKKNLGHVELVQADNGSVLLIRHVADFNEKDHQALVNYCEERNLILYLMPEADVLNHVRGEEPFYLIDGTKIYFTPKDFIQVNRKVNEQMVEQALSWLDLNENDSVLDLFCGLGNFSLPLAKKVKTVVGIEGVDDMVQRAKLNAERNHLSNVSFYQANLEEEASDQVWASTKFTKILLDPARAGAAGVMETVAKLKPQTVVYVSCNPATLARDSQLLIQHGFKLTRLGMLDMFPHTGHLESMALFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Aliivibrio salmonicida (strain LFI1238)
Length
438 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.809 kDa
Sequence
MAQFFKPKKKASVNTKHLSVDVVRLDHNSAGIAFVDKKPVFIEGALPEEQAIIQFIEQKKQYSRAKLIKLTKKSSKRQAPICQHYDDCGGCNLQHLQHAEQIIAKNDKLQELMKKQGVDACDVAEPILANEHDYRRRARISLIMNKQTNQLDFGFRKKQSKEIVNVRHCPVLVKELDQHLESLYTLLNQLKGKRHLGHVELVQADNGSVLLIRHVAAFNEKDQQALLHYCEERDLILYLMPESDVLNHVYGEEPYYVIDEVKIYFTPKDFIQVNASINDSMVNQALTWLDLNADDCVLDLFCGLGNFSLPLAQKVKTVVGIEGVEEMVKRAQSNAKRNELDNVTFYQANLEEPIDQQVWASTKFTKILLDPARAGAAGVMQTVAKLKPETVVYVSCNPATLARDSQLLIQRGYKLTRLGMLDMFPHTGHLESMALFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Pasteurella multocida (strain Pm70)
Length
437 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
50.022 kDa
Sequence
MVLHYTPHQSAPRNTTFVAEILDLDYQGRGVAKVQGKTWFIENALPQEKVEVRIVDEKRHYGHGISCKILTPHPDRQSAKCAYYAQCGGCQSQHIPIDMQRQAKQQALFQRLQQLQPQATFMPMIVAAPWHYRRRVRLSVRFHPKSKQLAMGLRQRNTQQIVNLQHCDVLEIPLSQLLPKLHLLFSTWSLPKNLGHVELVHADNGIAMLLRHTGNLAQTDRTLLTNFAQQENLMLFVQDDQQITQLHGEAPYYILRDGTKLQFDIRDFIQVNAVVNQKMIDTALEWLELTSNDNVLDLFCGMGNFTLPISRQVNQVVGIEGVGEMVEKAKRNAEQNQCDNVQFYQANLDQPFVQQHWASQHFNKILLDPPRTGAAFALHALCELGAEKILYVSCNPATLVRDTAILLQFNYRLKKVAMIDMFPNTGHLESISLFEKE
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Haemophilus parainfluenzae (strain T3T1)
Length
436 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.55 kDa
Sequence
MALLYAPQKKQKTTQKIVAEIQDLDYQGLGVAKIQGKTWFIENALPTEKVEAVVTDEKRQYGLATAQKWLQESSQRVEPQCRYYGRCGGCQGQHIPVEMQRKAKEKALFSRLSKLQAEPIQLMPMICGEQWAYRRRVRLSLLWNAKSKTVEMGFRQKNSNQLVSIQQCLVAEQAINDLIPKLTSLLAQYSAPKQLGHIELVSAENGVAMLLRYKGNLAETDRTLLLEFARVNAVNLFLQDDQNIQLVHGEMPYYALDDIRLSFDIRDFIQVNTRLNQQMVETALDWLDLNQDDHVLDLFCGMGNFTLPLAKRVKSAVGIEGVLDMVKKAQANAQFNHIENVEFYQADLDQSFSEQPWSKQHFNKILLDPPRSGAAFALNALCELGAESILYVSCNPATLVRDAEILRSFGYRIIKTAMIDMFPNTSHLESVTLFIK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1)
Length
435 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
49.087 kDa
Sequence
MRKRTGRRPPQKNNKFPIYTKEFLVEGLTHDAKGVARDEGKVIFIEGALPGERVEAQVVKQGRRFDEAKTKKVLIESSSRVAPACAHFVECGGCQFQHLIYPDQVEAKTEWLSGQFRKLAIGDIELLSDHSEAYRRRARLSVFTKGGEHQIGFRARSSKDIVNIANCLVLTESLQSVFVALKERLHESSLTSRIGHVELLEDESGSSITIRLSREISATDESDWMVWASEVGVNLYWQRADESRISTARKHYYYVDGLNIQFHPQDFIQVNASMNEKMVEQAMRWLAPTKEDIVLDLFCGSGNFSLPLARRAGEVLGVEGLETMVEFARLNAQENDLDNVQFIAADLTKPAPKVLKSKKVTKVLLDPPRSGAFEFLETLVKFKPEQILYVSCNASTLARDAEYLIANGYVVSRVSLMEMFPQTAHAEAMMLLQRK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Klebsiella pneumoniae (strain 342)
Length
434 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.374 kDa
Sequence
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHQGKALFVSGVLPQEQAEVVLVEDKKQYARAQVKRRLTDSPQRQAPRCPHFGVCGGCQQQHASVALQQQSKRAALARLMKREVDEVIAGVPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAIVDVVQCPVLAPQLEALLPAVRECLSALSALRHLGHVELVQADNGPLMVLRHTAALPAGDREKLERFSQTHGLSLYLAPQSEILEHIHGEAPWYTSDGLRLVFSPRDFIQVNDGVNQQMVRTALEWLDLQPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAALNGLSNVTFFHENLEEDVTRQAWAKHGFDKVLLDPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERRLT
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Length
434 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.497 kDa
Sequence
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHQGKALFVSGVLPHEQAEVVLVEDKKQYARAEVKRRLTDSPQRQAPRCPHFGVCGGCQQQHASVPLQQQSKRAALGRLMKREVDDVIAGAPWGYRRRARLSLNYQPKTQQLQMGFRQANAKAIVDVVQCPVLVPQLEALLPAVRECLSALSALRHLGHVELVQADNGPLMVLRHTAALPATDREKLERFSQTHGLSLYLAPQSEILEHIHGEAPWYTSDGLRLVFSPRDFIQVNDGVNQQMVRTALEWLDLRPEDRVLDLFCGMGNFTLPLATRAAHVVGVEGVPALVEKGRENAARNGLSNVTFFHENLEEDVTRQAWAKHGFDKVLLDPARAGAPGVMPHIIKLAPRRVVYVSCNPATLARDSETLLQAGYQIQRLAMLDMFPHTGHLESMVLFERRLT
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Escherichia coli O157:H7
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.155 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLEVEPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNCLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Escherichia coli O1:K1 / APEC
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.989 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDCVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.042 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.042 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Escherichia coli (strain K12)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.052 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Escherichia coli (strain UTI89 / UPEC)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.989 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVEPEDCVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shigella boydii serotype 4 (strain Sb227)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.025 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVASALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shigella dysenteriae serotype 1 (strain Sd197)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.118 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLSQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEIFETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shigella flexneri serotype 5b (strain 8401)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.012 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTASLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shigella flexneri
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.022 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Shigella sonnei (strain Ss046)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.025 kDa
Sequence
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPGRETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVMACLGSLQVMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Aromatoleum aromaticum (strain EbN1)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
46.883 kDa
Sequence
MPVAVIESLDHEGRGVAHVDGKVVFVEGALAGEQVEYTVYRQRPSYDLAEATRIIKASAQRVRPRCEHFGVCGGCSMQHLDSVAQAAAKQRVLEDALWHVGKVRPDIIYAAIHGPSWGYRYRARIGVRVVPKKGGVLIGFHERRSSYIADMRSCPILPPHVSGMLPALHELVGGLSIADRLPQIEIAIGDTAIVLVFRNLLPLTPADEARLAAFAGEHGVQVWLQPGAPATAHPLHPKGAAPLAYTLPEFDVAMAFQPTDFTQVNIDINRLLIRRSLQLLDPRPGERIADLFCGLGNFSLPIARCGATVVGVEGSESLVRRAAKNARRNGLHGRSEFHAANLFEATEDSLAALGRLDKLLIDPPREGAIAVVKALSTLQSPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVESIALFERN
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Azoarcus sp. (strain BH72)
Length
433 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
46.82 kDa
Sequence
MPTAVIESLDHEGRGIARVEGKAVFIEGGLPGETVEYRVLRSKPNYEQAEATRIVRRSALRVAPRCPHFGVCGGCSMQHLDTLAQAATKQRVLEDALWRIGKVKPGIIYSAIQGPAWGYRYRARLGVRLVPAKGGVLIGFHERRSSYIADLGVCPVLPAHVSALLPALKVLVASLSIADRLPQIEVAVSEATTVLVFRNLLALKKADEAQLRSFAETHGVQVWLQPEGPDSIVPLHPRSGPGLTYTLPEFDVALDFRATDFTQVNVHINRLLIRRAMQLLQPAPGERIADLFCGLGNFSLPIARRGATVVGVEGSEALVARALENARRNGLDSRTEFHAANLFDATEDSLAALGPLDKLLIDPPREGAIAVVKAVGPAQQPARIVYVSCNPATLARDAAVLVHEKGYVLRGAGIANMFPQTSHVESIALFERP
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Length
432 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.274 kDa
Sequence
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPQEKGDVVITEDKKQFARAQVKRRLNDSPERETPRCPHFGVCGGCQQQHASVALQQRSKSAALSRLMKCDVAEVIADTPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVRQCPILVPQLEALLPRVRACLESLQGNRHFGHVELVQAGNGTLMVLRHTAPLNATDREKLERFSHSEGLSLFLAPQSDILEPLTGEAPWYDSNGLRLTFSPRDFIQVNEGVNQKMVARALEWLDIQPDDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENARRNGLQNVTFFHENLEEDVTKQQWAKNGFDKILLDPARAGAAGVMKHIIKLKPIRIVYVSCNPATLARDSDALLNAGYQIQRLAMLDMFPHTGHLESMVLFERL
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Cronobacter sakazakii (strain ATCC BAA-894)
Length
432 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
48.152 kDa
Sequence
MAQFYSAKRRVTTREIITVTTDGLDAFGQGVARHHGKALFIAGLLPGERAEVVLSEDKKQFARGDVKKRLSESPERETPRCPHFGVCGGCQQQHASVALQQRSKAQALCRMMKREVDEVISGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCLSSLDGVRHLGHVELVDVTSGPLMVLRHLKPLSAADREKLECFSHSEGVALYLAPQSDTLEHLNGEMPWYESDGLRLTFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDYNAGLNALKNVTFFQHNLEEDVTRQPWAQQGFDKVLLDPARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLESMALFERD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Dechloromonas aromatica (strain RCB)
Length
432 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.61 kDa
Sequence
MPIGKIESLDHEARGITRQEGKAIFVDGALPGETVEYASFRRKSKFELAHLVHVIKPSTARVEPCCPHFGVCGGCAMQHMEPSAQVAAKQRVLEDSLWHIGRIRPETMLPPIQGEPWGYRHRARLAVRRVSKSGGMLIGFHEWRSSYIADIRSCAILPPHVSALLMPMRELFAALSIAERIREVDVAVGEHCTALLLRILDPLTPADERLLCDFVDRNDVVFYLQPKGPDTAFRFYPSGGPRLSYTLPEFGLEFDFKPTDFTQVNHAVNRVLVRRALRLLDPQPSERIADMFCGLGNFTLPIARSGATVIGVEGSAALVRRGRESAAANGLADHVEFGVANLFECTEQSLAALGRFDKMLIDPPREGAVELVRAIGKDAPKRIVYVSCNPGTLARDAAVLVTEKGYRFVSAGAVNMFPHTAHVESIAVFELP
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Thiobacillus denitrificans (strain ATCC 25259)
Length
432 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.337 kDa
Sequence
MNPVVDILSLDHEGHGVARLDGKVTFVDGALAGERAEIAIFRKHAKYNSANAVAILAPSAQRAEPRCRYFGRCGGCSMQHLEPSAQVAAKQRVLEENLARIGKVRPSVLLPALHGPSWGYRGRARLSVRRVEKKGGVLVGFHEKRSSFIADMASCEVLAPGVSALIQPLRELIGRLSNADRIPQIEVAAGEHVIVLVFRLLEPWNDDDAAHVRAFADAHHVQVWEQRKGPETARPFWPDIAPELSYGLPEFGLVMPFRPTEFTQVNSAINRALVSRALRLLDPRPGERIADLFCGLGNFTLPIAHRGADVLGIEGSTELVARARENALRNALPHARFEVDNLFEMTPEKFAALGPFDKLLIDPPRSGAIEVVKSLPEAGAPRRIVYVSCDPATLARDAEVLVHVKGYRLEAAGVANMFPHTAHVESIALFER
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Enterobacter sp. (strain 638)
Length
431 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.927 kDa
Sequence
MAQFYSAKRRVTTRQIITVEATDLDPFGQGVARHNGKALFIPGLLPNERAEVTLTEDKSKYSRGQVKRRLNDSPERVAPRCPHFGVCGGCQQQHASVALQQSSKSTALARLMKHEVNEIISGEPWGYRRRARLSLSYEPKTQKLAMGFRKAASSDIVDVKQCPVLVPHLEALLPHLRNCLSDLQGARALGHVELVLADNGPLMVLRHTAPLSAPDREKLERFSHSHELTLFLAPQSEILERVSGDDPWYLSDGLRLTFSPRDFIQVNDGVNQQMVAKAIEWLDVQPDDRVLDLFCGMGNFTLPLAQRAASVVGVEGVNALVEKGQQNAHHNALDNVTFFHENLEEDVTQQPWAQHGFDKVLLDPARAGAPGVMQHIIKLAPKRVVYVSCNPATLARDSEALLSAGYQIQRLAMLDMFPHTGHLESMVLFQL
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Length
431 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.768 kDa
Sequence
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVGIDLQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Salmonella typhi
Length
431 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.877 kDa
Sequence
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVGIDLQQRSKSAALARLMKHEVNDIIAGASWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLTFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVQALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Length
431 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.768 kDa
Sequence
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Salmonella choleraesuis (strain SC-B67)
Length
431 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.768 kDa
Sequence
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVKDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Dichelobacter nodosus (strain VCS1703A)
Length
424 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
47.219 kDa
Sequence
MEKFPAVTVFDLDYQGRGVAKIDGQVVFIEGALPDETVTFCKTSAKKQFIEAVVDEIIEPSPQRVAPRCPFYDRCGGCALQHWHSQEQLLGKQKLWLTQLQRLGGAQPEHVLLPLAGKEWRYRRRARLAVHYENDVIAVGFKAKRSHDVVAVNDCLILQEHLAAALPLLPDFLRALLPVKVDEILLTAGEKVAALTLRTKKRALSPAWGEKWANLAGAHWQLWENDRCLFGEPNDLYYQPISGVTLHFTPDDFIQVNASVNEALIQTVLAWLAPLEKSEVLDLFSGLGNFSLPLAYKGARVTAVEGVRAMVQRGAKMAAEQQLSSRLEMQCMDLFSVSAAQMKSWQSAKSWLLDPPRAGAHAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHLERGQVVNMFAHSAHIESVILMTRTI
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Hydrogenovibrio crunogenus (strain XCL-2)
Length
407 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
45.57 kDa
Sequence
MKTVTVKIETLSHDGRGVGRLNGKAIFVEEAVPGDVAEIRITGRQPSYEEAKIVRLIDSSEDRVEAFCPHYETCGGCQLQHLSIDAQRKWKASHFYTALSKAVNMKACQIEAPLVGHDHAYRRRARLVLGKNKTDKEARFGFRAKGSNEIVDIEQCPLLTPALNEALNQKRTAVLPHASRALKEISVVDADNGIFWSDQAVDSSTWPSYGVNGLTLNFPAQGFVQVNAEMNEQMVNKALDWLDLNKEQRVLDLFCGVGNFTLPIAQQVKEVVGIEGETDLVQMAQHNASRAHCEQATFYQADLFKDVTPQNWFRKQKYDRVLLDPGRQGAYQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSHTEVMAQLIKTGKKPKQRGPGIFKL
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD

Gene
rlmD
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Organism
Photobacterium angustum (strain S14 / CCUG 15956)
Length
220 amino acids
Function
Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.
Similarity
Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
Mass
24.49 kDa
Fragment
single
Sequence
QLNMALMLFLAPSSDELDHVLGEQPYYDIDDVRLTFSPKDFIQVNRDVNVKMVEQAINWLDIQPQDRVLDLFCGLGNFSLPLARRAKAVVGVEGVDEMVARATANAAANGLDNATFYQANLDEDVTKLVWAQEQFDKILLDPARAGAAGVMQHIVNLAPSKVVYVSCNPATLARDSQMLLQQGYKLARLGMMDMFPHTGHLESMTLFVKTNHHKKNSNVM
Protein
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD: rlmD